YRC Public Data Repository - Protein Structure Prediction

Protein:	PMP1
Organism:	Saccharomyces cerevisiae
Length:	40 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMP1.

Description	E-value	Query Range	Subject Range
gi\|190405548 - gi\|190405548\|gb\|EDV08815.1\| proteolipid associated with plasma membrane H(+)-ATPase [Saccharomyces c... PMP2_YEAST - Plasma membrane ATPase proteolipid 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PMP... gi\|151944693 - gi\|151944693\|gb\|EDN62952.1\| plasma membrane proteolipid [Saccharomyces cerevisiae YJM789] PMP2 - Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p); regulates plasma membrane H(+)-ATPa...	56.0	[0..2]	[40..5]

Back

Predicted Domain #1

Region A:
Residues: [1-40]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPGGVILV FILVGLACIA IIATIIYRKW QARQRGLQRF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits