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View Structure Prediction Details

Protein: PMP1
Organism: Saccharomyces cerevisiae
Length: 40 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMP1.

Description E-value Query
Range
Subject
Range
gi|190405548 - gi|190405548|gb|EDV08815.1| proteolipid associated with plasma membrane H(+)-ATPase [Saccharomyces c...
PMP2_YEAST - Plasma membrane ATPase proteolipid 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PMP...
gi|151944693 - gi|151944693|gb|EDN62952.1| plasma membrane proteolipid [Saccharomyces cerevisiae YJM789]
PMP2 - Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p); regulates plasma membrane H(+)-ATPa...
56.0 [0..2] [40..5]

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Predicted Domain #1
Region A:
Residues: [1-40]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPGGVILV FILVGLACIA IIATIIYRKW QARQRGLQRF 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.372 a.5.2 UBA-like
View Download 0.349 a.140.2 SAP domain
View Download 0.335 a.4.1 Homeodomain-like
View Download 0.334 a.140.2 SAP domain
View Download 0.303 a.140.3 Rho termination factor, N-terminal domain
View Download 0.260 a.5.1 DNA helicase RuvA subunit, C-terminal domain
View Download 0.241 a.140.1 LEM domain
View Download 0.222 a.140.1 LEM domain


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