| Protein: | RRP7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 297 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP7.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..297] | [1..297] |
|
|
1.0E-72 | [1..178] | [1..178] |
|
|
3.0E-61 | [34..296] | [22..254] |
|
|
2.0E-60 | [1..149] | [1..149] |
|
|
1.0E-23 | [167..296] | [182..342] |
|
Region A: Residues: [1-152] |
1 11 21 31 41 51
| | | | | |
1 MGIEDISAMK NGFIVVPFKL PDHKALPKSQ EASLHFMFAK RHQSSNSNES DCLFLVNLPL 60
61 LSNIEHMKKF VGQLCGKYDT VSHVEELLYN DEFGLHEVDL SALTSDLMSS TDVNEKRYTP 120
121 RNTALLKFVD AASINNCWNA LKKYSNLHAK HP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| RNA binding | 5.63242063989137 | bayes_pls_golite062009 |
| mRNA binding | 3.87784929382714 | bayes_pls_golite062009 |
| nucleic acid binding | 3.55052626921306 | bayes_pls_golite062009 |
| binding | 3.3324591601331 | bayes_pls_golite062009 |
| 3.14079080441249 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 1.9439583927206 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.58538594745054 | bayes_pls_golite062009 |
| structural molecule activity | 1.30816853575581 | bayes_pls_golite062009 |
| protein binding | 1.26544376923141 | bayes_pls_golite062009 |
| transcription regulator activity | 1.10029555513317 | bayes_pls_golite062009 |
| DNA binding | 0.984725930713243 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.762984801550668 | bayes_pls_golite062009 |
| snoRNA binding | 0.749770142991192 | bayes_pls_golite062009 |
| transcription factor activity | 0.255891228964936 | bayes_pls_golite062009 |
| ligase activity | 0.189138561929496 | bayes_pls_golite062009 |
| snRNA binding | 0.168885334268568 | bayes_pls_golite062009 |
|
Region A: Residues: [153-297] |
1 11 21 31 41 51
| | | | | |
1 NELFEWTYTT PSFTTFVNFY KPLDIDYLKE DIHTHMAIFE QREAQAQEDV QSSIVDEDGF 60
61 TLVVGKNTKS LNSIRKKILN KNPLSKHENK AKPISNIDKK AKKDFYRFQV RERKKQEINQ 120
121 LLSKFKEDQE RIKVMKAKRK FNPYT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.903 | 0.421 | nucleolus | a.25.1 | Ferritin-like |
