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View Structure Prediction Details

Protein: RER1
Organism: Saccharomyces cerevisiae
Length: 188 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RER1.

Description E-value Query
Range		 Subject
Range
RER1A_ARATH - Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1
 5.0E-81 [4..188] [2..185]
RER1 - Protein involved in retention of membrane proteins, including Sec12p, in the ER; localized to Golgi;...
gi|190406435 - gi|190406435|gb|EDV09702.1| protein RER1 [Saccharomyces cerevisiae RM11-1a]
RER1_YEAST - Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RER1 PE=1 SV=2
gi|207347344 - gi|207347344|gb|EDZ73544.1| YCL001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 1.0E-79 [1..188] [1..188]
RER1_SACPS - Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1
 4.0E-79 [1..188] [1..188]
gi|7688699 - gi|7688699|gb|AAF67490.1|AF157324_1 RER1 protein [Homo sapiens]
 2.0E-72 [4..188] [5..189]
RER1_MOUSE - Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1
RER1_RAT - Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1
 2.0E-70 [1..188] [1..189]
gi|220948254, gi... - gi|220957496|gb|ACL91291.1| CG11857-PA [synthetic construct], gi|220948254|gb|ACL86670.1| CG11857-PA...
CG11857-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11857 (CG11857, FBgn0039303). It is a prote...
 3.0E-69 [1..183] [2..184]
rer1 - Rer1 family protein
RER1_SCHPO - Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rer1 PE=3 SV=1
 7.0E-61 [17..184] [11..182]

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Predicted Domain #1
Region A:
Residues: [1-188] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYDSSDTMN GGSSNPLITK MNTMKLLYQH YLDKVTPHAK ERWAVLGGLL CLFMVRITMA  60
   61 EGWYVICYGL GLFLLNQFLA FLTPKFDMSL QQDEENNELE AGEKSEEFRP FIRRLPEFKF 120
  121 WYNSIRATVI SLLLSLFSIF DIPVFWPILL MYFILLFFLT MRRQIQHMIK YRYIPLDIGK 180
  181 KKYSHSSN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 141.552842
Match: PF03248
Description: Rer1 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle