YRC Public Data Repository - Protein Structure Prediction

Protein:	RER1
Organism:	Saccharomyces cerevisiae
Length:	188 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RER1.

Description	E-value	Query Range	Subject Range
RER1A_ARATH - Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1	5.0E-81	[4..188]	[2..185]
RER1 - Protein involved in retention of membrane proteins, including Sec12p, in the ER; localized to Golgi;... gi\|190406435 - gi\|190406435\|gb\|EDV09702.1\| protein RER1 [Saccharomyces cerevisiae RM11-1a] RER1_YEAST - Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RER1 PE=1 SV=2 gi\|207347344 - gi\|207347344\|gb\|EDZ73544.1\| YCL001Wp-like protein [Saccharomyces cerevisiae AWRI1631]	1.0E-79	[1..188]	[1..188]
RER1_SACPS - Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1	4.0E-79	[1..188]	[1..188]
gi\|7688699 - gi\|7688699\|gb\|AAF67490.1\|AF157324_1 RER1 protein [Homo sapiens]	2.0E-72	[4..188]	[5..189]
RER1_MOUSE - Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 RER1_RAT - Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1	2.0E-70	[1..188]	[1..189]
gi\|220948254, gi... - gi\|220957496\|gb\|ACL91291.1\| CG11857-PA [synthetic construct], gi\|220948254\|gb\|ACL86670.1\| CG11857-PA... CG11857-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11857 (CG11857, FBgn0039303). It is a prote...	3.0E-69	[1..183]	[2..184]
rer1 - Rer1 family protein RER1_SCHPO - Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rer1 PE=3 SV=1	7.0E-61	[17..184]	[11..182]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYDSSDTMN GGSSNPLITK MNTMKLLYQH YLDKVTPHAK ERWAVLGGLL CLFMVRITMA  60
   61 EGWYVICYGL GLFLLNQFLA FLTPKFDMSL QQDEENNELE AGEKSEEFRP FIRRLPEFKF 120
  121 WYNSIRATVI SLLLSLFSIF DIPVFWPILL MYFILLFFLT MRRQIQHMIK YRYIPLDIGK 180
  181 KKYSHSSN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	141.552842
Match:	PF03248
Description:	Rer1 family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits