| Protein: | SWC3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 638 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWC3.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-68 | [88..633] | [837..1404] |
|
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4.0E-67 | [88..633] | [840..1407] |
|
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5.0E-67 | [88..633] | [51..618] |
|
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6.0E-67 | [88..633] | [835..1402] |
|
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2.0E-66 | [88..633] | [842..1409] |
|
Region A: Residues: [1-52] |
1 11 21 31 41 51
| | | | | |
1 MRFGSNARRR QVRMPAVLRT RSKESSIEQK PASRTRTRSR RGKRGRDDDD DD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [53-444] |
1 11 21 31 41 51
| | | | | |
1 DDEESDDAYD EVGNDYDEYA SRAKLATNRP FEIVAGLPAS VELPNYNSSL THPQSIKNSG 60
61 VLYDSLVSSR RTWVQGEMFE LYWRRPKKIV SESTPAATES PTSGTIPLIR DKMQKMCDCV 120
121 MSGGPHTFKV RLFILKNDKI EQKWQDEQEL KKKEKELKRK NDAEAKRLRM EERKRQQMQK 180
181 KIAKEQKLQL QKENKAKQKL EQEALKLKRK EEMKKLKEQN KNKQGSPSSS MHDPRMIMNL 240
241 NLMAQEDPKL NTLMETVAKG LANNSQLEEF KKFIEIAKKR SLEENPVNKR PSVTTTRPAP 300
301 PSKAKDVAED HRLNSITLVK SSKTAATEPE PKKADDENAE KQQSKEAKTT AESTQVDVKK 360
361 EEEDVKEKGV KSEDTQKKED NQVVPKRKRR KN
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [445-638] |
1 11 21 31 41 51
| | | | | |
1 AIKEDKDMQL TAFQQKYVQG AEIILEYLEF THSRYYLPKK SVVEFLEDTD EIIISWIVIH 60
61 NSKEIEKFKT KKIKAKLKAD QKLNKEDAKP GSDVEKEVSF NPLFEADCPT PLYTPMTMKL 120
121 SGIHKRFNQI IRNSVSPMEE VVKEMEKILQ IGTRLSGYNL WYQLDGYDDE ALSESLRFEL 180
181 NEWEHAMRSR RHKR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
