Protein: | SWC3 |
Organism: | Saccharomyces cerevisiae |
Length: | 638 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWC3.
Description | E-value | Query Range |
Subject Range |
|
2.0E-68 | [88..633] | [837..1404] |
|
4.0E-67 | [88..633] | [840..1407] |
|
5.0E-67 | [88..633] | [51..618] |
|
6.0E-67 | [88..633] | [835..1402] |
|
2.0E-66 | [88..633] | [842..1409] |
Region A: Residues: [1-52] |
1 11 21 31 41 51 | | | | | | 1 MRFGSNARRR QVRMPAVLRT RSKESSIEQK PASRTRTRSR RGKRGRDDDD DD |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.227 | a.60.1 | SAM/Pointed domain |
View | Download | 0.329 | a.16.1 | S15/NS1 RNA-binding domain |
View | Download | 0.226 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
View | Download | 0.245 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
View | Download | 0.280 | a.64.2 | Bacteriocin AS-48 |
View | Download | 0.259 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
View | Download | 0.226 | a.5.2 | UBA-like |
Region A: Residues: [53-444] |
1 11 21 31 41 51 | | | | | | 1 DDEESDDAYD EVGNDYDEYA SRAKLATNRP FEIVAGLPAS VELPNYNSSL THPQSIKNSG 60 61 VLYDSLVSSR RTWVQGEMFE LYWRRPKKIV SESTPAATES PTSGTIPLIR DKMQKMCDCV 120 121 MSGGPHTFKV RLFILKNDKI EQKWQDEQEL KKKEKELKRK NDAEAKRLRM EERKRQQMQK 180 181 KIAKEQKLQL QKENKAKQKL EQEALKLKRK EEMKKLKEQN KNKQGSPSSS MHDPRMIMNL 240 241 NLMAQEDPKL NTLMETVAKG LANNSQLEEF KKFIEIAKKR SLEENPVNKR PSVTTTRPAP 300 301 PSKAKDVAED HRLNSITLVK SSKTAATEPE PKKADDENAE KQQSKEAKTT AESTQVDVKK 360 361 EEEDVKEKGV KSEDTQKKED NQVVPKRKRR KN |
Detection Method: | |
Confidence: | 25.69897 |
Match: | 1i84S_ |
Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [445-638] |
1 11 21 31 41 51 | | | | | | 1 AIKEDKDMQL TAFQQKYVQG AEIILEYLEF THSRYYLPKK SVVEFLEDTD EIIISWIVIH 60 61 NSKEIEKFKT KKIKAKLKAD QKLNKEDAKP GSDVEKEVSF NPLFEADCPT PLYTPMTMKL 120 121 SGIHKRFNQI IRNSVSPMEE VVKEMEKILQ IGTRLSGYNL WYQLDGYDDE ALSESLRFEL 180 181 NEWEHAMRSR RHKR |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.