| Protein: | gi|215697038, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 475 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215697038, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
454.0 | [0..71] | [475..32] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MAGSGRPPAA QKKILQSLRP PLPFAASSRS PFAAPNDYHR FPAGGAAAAA ASGSGGIGAG 60
61 GAGGGGDIEE GLVIRTPQKR KAPEESDVAE SSDCMITSPG FAVSPMLTPV SGKAVKTSKS 120
121 KTKNNKAGPQ TPTSNVGSPL NP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [143-225] |
1 11 21 31 41 51
| | | | | |
1 PTPVGTCRYD SSLGLLTKKF INLLKQAPDG ILDLNNAAET LEVQKRRIYD ITNVLEGIGL 60
61 IEKTLKNRIR WKGLDDSGVE LDN
|
| Detection Method: | |
| Confidence: | 23.221849 |
| Match: | 1cf7A |
| Description: | Cell cycle transcription factor E2F-4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [226-318] |
1 11 21 31 41 51
| | | | | |
1 GLSALQAEVE NLSLKEQALD ERISDMREKL RGLTEDENNQ RWLYVTEDDI KGLPCFQNET 60
61 LIAIKAPHGT TLEVPDPDEA GDYLQRRYRI VLR
|
| Detection Method: | |
| Confidence: | 5.05 |
| Match: | 2azeB |
| Description: | Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [319-373] |
1 11 21 31 41 51
| | | | | |
1 STMGPIDVYL VSQFDEKFED LGGGATPSGH ANVPKHQPTE VFNTTNAGVG QCSNS
|
| Detection Method: | |
| Confidence: | 24.045757 |
| Match: | 2azeA |
| Description: | Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [374-475] |
1 11 21 31 41 51
| | | | | |
1 VAVDNNIQHS QTIPQDPSAS HDFGGMTRII PSDIDTDADY WLISEGDVSI TDMWKTAPDV 60
61 QWDESLDTDV FLSEDVRTPS SHNQQPSAVG GPQMQVSDMH KP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
