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View Structure Prediction Details

Protein: gi|123994315, gi...
Organism: synthetic construct
Length: 198 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123994315, gi....

Description E-value Query
Range		 Subject
Range
gi|4097579 - gi|4097579|gb|AAD00116.1| NTGP1 [Nicotiana tabacum]
 3.0E-59 [1..198] [1..199]
YKT6 - Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and wit...
gi|151941723 - gi|151941723|gb|EDN60084.1| v-SNARE [Saccharomyces cerevisiae YJM789]
gi|190409647 - gi|190409647|gb|EDV12912.1| hypothetical protein SCRG_03832 [Saccharomyces cerevisiae RM11-1a]
ORFP:14223 - YKL196C, Contig c319 75707-76309
gi|207343688 - gi|207343688|gb|EDZ71077.1| YKL196Cp-like protein [Saccharomyces cerevisiae AWRI1631]
YKT6_YEAST - Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKT6 PE=1 SV=...
 2.0E-58 [1..198] [1..200]
gi|35187452 - gi|35187452|gb|AAQ84317.1| fiber NTGP1-related protein [Gossypium barbadense]
 9.0E-58 [1..198] [1..199]
gi|25395867 - gi|25395867|pir||E88504 protein B0361.8 [imported] - Caenorhabditis elegans
 2.0E-57 [1..195] [519..716]
gi|25349719, gi|... - gi|3859707|emb|CAA21982.1| probable snare protein [Candida albicans], pir||T52162 probable snare pro...
gi|68469373, gi|... - gi|68469373|ref|XP_721201.1| hypothetical protein CaO19.10491 [Candida albicans SC5314], gi|68468829...
gi|238879237 - gi|238879237|gb|EEQ42875.1| hypothetical protein CAWG_01098 [Candida albicans WO-1]
 4.0E-57 [1..198] [1..200]
gi|7512185, gi|3... - pir||JE0228 Xsnare 1 protein - African clawed frog, gi|3172542|gb|AAC32182.1| isoprenylated v-SNARE ...
 4.0E-57 [1..198] [1..198]
gi|47681462 - gi|47681462|gb|AAT37501.1| putative SNARE protein [Hevea brasiliensis]
 5.0E-57 [1..198] [1..199]
YKT6_MOUSE - Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6 PE=1 SV=1
 5.0E-57 [1..198] [1..198]
gi|49456969 - gi|49456969|emb|CAG46805.1| YKT6 [Homo sapiens]
 5.0E-57 [1..198] [1..198]
gi|60652877, gi|... - gi|60652877|gb|AAX29133.1| SNARE protein Ykt6 [synthetic construct], gi|60652875|gb|AAX29132.1| SNAR...
 6.0E-57 [1..198] [1..198]

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Predicted Domain #1
Region A:
Residues: [1-131] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYSLSVLY KGEAKVVLLK AAYDVSSFSF FQRSSVQEFM TFTSQLIVER SSKGTRASVK  60
   61 EQDYLCHVYV RNDSLAGVVI ADNEYPSRVA FTLLEKVLDE FSKQVDRIDW PVGSPATIHY 120
  121 PALDGHLSRY Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1h8mA
Description: Synaptobrevin homolog 1 ykt6
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein-cysteine S-acyltransferase activity 5.70902768432932 bayes_pls_golite062009
protein-cysteine S-palmitoleyltransferase activity 5.70902768432932 bayes_pls_golite062009
S-acyltransferase activity 2.42277624456482 bayes_pls_golite062009
palmitoyltransferase activity 2.39665981402803 bayes_pls_golite062009
SNAP receptor activity 2.23518960752054 bayes_pls_golite062009
clathrin binding 2.03985651011974 bayes_pls_golite062009
binding 1.76450203501026 bayes_pls_golite062009
transporter activity 1.71943098913274 bayes_pls_golite062009
substrate-specific transporter activity 0.939682472116899 bayes_pls_golite062009
hydrolase activity 0.815544630085919 bayes_pls_golite062009
signal recognition particle binding 0.66489873553532 bayes_pls_golite062009
protein binding 0.590936503990514 bayes_pls_golite062009
protein transporter activity 0.17469233791907 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.131410992694836 bayes_pls_golite062009
pyrophosphatase activity 0.0936690070284361 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0846345824909659 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0820309452260982 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [132-198] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPREADPMTK VQAELDETKI ILHNTMESLL ERGEKLDDLV SKSEVLGTQS KAFYKTARKQ  60
   61 NSCCAIM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 1kilA
Description: Synaptobrevin
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle