YRC Public Data Repository - Protein Structure Prediction

Protein:	RS28A_SCHPO, RS2...
Organism:	Schizosaccharomyces pombe 972h-
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS28A_SCHPO, RS2....

Description	E-value	Query Range	Subject Range
gi\|46108760, gi\|... - gi\|46108760\|ref\|XP_381438.1\| hypothetical protein FG01262.1 [Gibberella zeae PH-1], gi\|42547728\|gb\|E...	117.0	[0..1]	[65..1]
gi\|45268967 - gi\|45268967\|gb\|AAS55896.1\| 40S ribosomal protein S28 [Sus scrofa]	113.0	[0..1]	[68..12]
gi\|115956863, gi... - gi\|115956863\|ref\|XP_001190124.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	113.0	[0..4]	[68..1]
gi\|32400865 - gi\|32400865\|gb\|AAP80664.1\|AF479045_1 S28 ribosomal protein [Triticum aestivum]	110.0	[0..2]	[68..20]
gi\|209737176, gi... - gi\|223672277\|gb\|ACN12320.1\| 40S ribosomal protein S28 [Salmo salar], gi\|223646430\|gb\|ACN09973.1\| 40S... gi\|229366522 - gi\|229366522\|gb\|ACQ58241.1\| 40S ribosomal protein S28 [Anoplopoma fimbria] gi\|124300845 - gi\|124300845\|dbj\|BAF45918.1\| ribosomal protein S28 [Solea senegalensis] gi\|225711112 - gi\|225711112\|gb\|ACO11402.1\| 40S ribosomal protein S28 [Caligus rogercresseyi] gi\|225716510 - gi\|225716510\|gb\|ACO14101.1\| 40S ribosomal protein S28 [Esox lucius] RS28_ICTPU - 40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1 RS28_DANRE - 40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	109.0	[0..1]	[68..1]
gi\|30267871 - gi\|30267871\|gb\|AAP21778.1\| ribosomal protein S28 [Branchiostoma belcheri tsingtaunese] gi\|116805067 - gi\|116805067\|gb\|ABK27630.1\| ribosomal protein S28 [Branchiostoma belcheri]	109.0	[0..1]	[68..1]
gi\|61369337 - gi\|61369337\|gb\|AAX43319.1\| ribosomal protein S28 [synthetic construct]	108.0	[0..1]	[68..1]
gi\|62858613, gi\|... - gi\|62858613\|ref\|NP_001016950.1\| hypothetical protein LOC549704 [Xenopus (Silurana) tropicalis], gi\|1... gi\|71051186, gi\|... - gi\|71051186\|gb\|AAH99294.1\| MGC85550 protein [Xenopus laevis], gi\|51873955\|gb\|AAH78605.1\| MGC85550 pr...	108.0	[0..1]	[68..1]
tr\|G3I5R2\|G3I5R2... - 40S ribosomal protein S28 OS=Cricetulus griseus GN=H671_5g13698 PE=3 SV=1 RS28_MOUSE - 40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=1 SV=1 ENSCJAT00000020884 - null gi\|57726 - gi\|57726\|emb\|CAA41967.1\| ribosomal protein S28 [Rattus rattus] tr\|M3X2Q9\|M3X2Q9... - Ribosomal protein S28 OS=Felis catus GN=RPS28 PE=3 SV=1 RS28_BOVIN - 40S ribosomal protein S28 OS=Bos taurus GN=RPS28 PE=3 SV=1 gi\|114675098, gi... - gi\|114675098\|ref\|XP_001157792.1\| PREDICTED: similar to ribosomal protein S28 [Pan troglodytes], gi\|1... gi\|197129910, gi... - gi\|197129910\|gb\|ACH46408.1\| putative ribosomal protein S28 [Taeniopygia guttata], gi\|197127423\|gb\|AC... gi\|73987191 - gi\|73987191\|ref\|XP_542128.2\| PREDICTED: similar to 40S ribosomal protein S28 [Canis familiaris] gi\|123980908, gi... - gi\|61359175\|gb\|AAX41679.1\| ribosomal protein S28 [synthetic construct], gi\|123995725\|gb\|ABM85464.1\| ... gi\|149716415 - gi\|149716415\|ref\|XP_001498263.1\| PREDICTED: similar to ribosomal protein S28 [Equus caballus] gi\|363743624\|ref... - PREDICTED: 40S ribosomal protein S28 [Gallus gallus] gi\|109123228 - gi\|109123228\|ref\|XP_001093698.1\| PREDICTED: similar to 40S ribosomal protein S28 [Macaca mulatta] tr\|G1TIB4\|G1TIB4... - pep:novel scaffold:oryCun2:GL018767:383778:384626:-1 gene:ENSOCUG00000021484 transcript:ENSOCUT00000... RPS28 - ribosomal protein S28 RS28_RAT - 40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1 RS28_PIG - 40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=1 SV=2	107.0	[0..1]	[68..1]
gi\|47216403 - gi\|47216403\|emb\|CAG01954.1\| unnamed protein product [Tetraodon nigroviridis]	107.0	[0..1]	[68..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSKVPVKL AKVIKVLGRT GSRGGVTQVR VEFMDDTSRS IIRNVKGPVR EDDILVLLES  60
   61 EREARRLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.09691
Match:	1ne3A
Description:	Solution structure of ribosomal protein S28E from Methanobacterium Thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH0256_1_68; Northeast Structural Genomics Target TT744
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.141433535514844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: