YRC Public Data Repository - Protein Structure Prediction

Protein:	RS19_BRUAB
Organism:	Brucella abortus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS19_BRUAB.

Description	E-value	Query Range	Subject Range
RS19_SYNP6 - 30S ribosomal protein S19 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsS ... gi\|2446894 - gi\|2446894\|dbj\|BAA22453.1\| 30S ribosomal protein S19 [Synechococcus sp.] RS19_SYNE7 - 30S ribosomal protein S19 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsS PE=3 SV=1	142.0	[0..1]	[91..1]
gi\|23010685 - gi\|23010685\|ref\|ZP_00051290.1\| COG0185: Ribosomal protein S19 [Magnetospirillum magnetotacticum MS-1...	142.0	[0..1]	[92..1]
gi\|221089326, gi... - gi\|221089326\|ref\|ZP_03558846.1\| ribosomal protein S19 [Geobacillus sp. Y412MC61], gi\|220706752\|gb\|EE... RS19_GEOKA - 30S ribosomal protein S19 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsS PE=3 SV=1 RS19_GEOKA - 30S ribosomal protein S19 OS=Geobacillus kaustophilus GN=rpsS PE=3 SV=1	141.0	[0..1]	[92..1]
RS19_GRABC - 30S ribosomal protein S19 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsS PE=...	141.0	[0..1]	[91..1]
RS19_CHESB - 30S ribosomal protein S19 OS=Chelativorans sp. (strain BNC1) GN=rpsS PE=3 SV=1	140.0	[0..1]	[92..1]
RS19_GEOSE - 30S ribosomal protein S19 OS=Geobacillus stearothermophilus GN=rpsS PE=1 SV=3	140.0	[0..1]	[92..1]
RS19_LISMO - 30S ribosomal protein S19 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rp... RS19_LISIN - 30S ribosomal protein S19 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpsS PE=3 SV=1 RS19_LISMC - 30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rpsS PE=3 SV=1 RS19_LISMC - 30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsS PE=3 SV=1 gi\|254825011 - gi\|254825011\|ref\|ZP_05230012.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J1-194] gi\|254991850 - gi\|254991850\|ref\|ZP_05274040.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J2-064] gi\|255023227 - gi\|255023227\|ref\|ZP_05295213.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J1-208] gi\|254854166 - gi\|254854166\|ref\|ZP_05243514.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL R2-503] gi\|254877814 - gi\|254877814\|ref\|ZP_05250524.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J2-071] gi\|255030704 - gi\|255030704\|ref\|ZP_05302655.1\| 30S ribosomal protein S19 [Listeria monocytogenes LO28] gi\|255519644 - gi\|255519644\|ref\|ZP_05386881.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL J1-175] gi\|254899921, gi... - gi\|254899921\|ref\|ZP_05259845.1\| 30S ribosomal protein S19 [Listeria monocytogenes J0161], gi\|1531856... RS19_LISW6 - 30S ribosomal protein S19 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC533... gi\|254912873, gi... - gi\|254912873\|ref\|ZP_05262885.1\| 30S ribosomal protein S19 [Listeria monocytogenes J2818], gi\|1531923... gi\|224503578 - gi\|224503578\|ref\|ZP_03671885.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL R2-561] gi\|153197656, gi... - gi\|254830940\|ref\|ZP_05235595.1\| 30S ribosomal protein S19 [Listeria monocytogenes 10403S], gi\|153197... gi\|224499301 - gi\|224499301\|ref\|ZP_03667650.1\| 30S ribosomal protein S19 [Listeria monocytogenes Finland 1988] gi\|133728647, gi... - gi\|254829077\|ref\|ZP_05233764.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL N3-165], gi\|15... gi\|133726027, gi... - gi\|254871331\|ref\|ZP_05244041.1\| 30S ribosomal protein S19 [Listeria monocytogenes FSL N1-017], gi\|15... gi\|254931102, gi... - gi\|254931102\|ref\|ZP_05264461.1\| 30S ribosomal protein S19 [Listeria monocytogenes HPB2262], gi\|15320... gi\|133731739, gi... - gi\|254937253\|ref\|ZP_05268950.1\| 30S ribosomal protein S19 [Listeria monocytogenes F6900], gi\|1531807... RS19_LISMH - 30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsS PE=3 SV=1 RS19_LISMF - 30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsS PE=3 SV=1 RS19_LISMO - 30S ribosomal protein S19 OS=Listeria monocytogenes GN=rpsS PE=3 SV=1 RS19_LISIN - 30S ribosomal protein S19 OS=Listeria innocua GN=rpsS PE=3 SV=1	140.0	[0..1]	[92..1]
RS19_TRIEI - 30S ribosomal protein S19 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsS PE=3 SV=1	140.0	[0..1]	[91..1]
RS19_BACHD - 30S ribosomal protein S19 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RS19_BACHD - 30S ribosomal protein S19 OS=Bacillus halodurans GN=rpsS PE=3 SV=1	139.0	[0..1]	[92..1]
RS19_STAES - 30S ribosomal protein S19 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsS PE=3 SV=1 RS19_STAEQ - 30S ribosomal protein S19 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsS PE=3 SV=... RS19_STAHJ - 30S ribosomal protein S19 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsS PE=3 SV=1 gi\|223042287, gi... - gi\|223042287\|ref\|ZP_03612336.1\| ribosomal protein S19 [Staphylococcus capitis SK14], gi\|222443950\|gb... RS19_STAEP - (Q8CRG4) 30S ribosomal protein S19	139.0	[0..1]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSVWKGPF VDGYLLKKAE KVREGGRNEV IKMWSRRSTI LPQFVGLTFG VYNGNKHVPV  60
   61 SVSEEMVGHK FGEFAPTRTY YGHGADKKAK RK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2gy9S
Description:	No description for 2gy9S was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	1.31016553389632	bayes_pls_golite062009
protein binding	0.597909497479366	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: