YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237522, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237522, gi|....

Description	E-value	Query Range	Subject Range
gi\|29342814, gi\|... - gi\|29375354\|ref\|NP_814508.1\| amino acid ABC transporter, amino acid-binding/permease protein [Entero... gi\|227554876, gi... - gi\|227554876\|ref\|ZP_03984923.1\| amino acid ABC superfamily ATP binding cassette transporter protein ...	194.0	[0..5]	[218..513]
gi\|62464008 - gi\|62464008\|ref\|ZP_00383312.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	179.0	[0..5]	[217..489]
gi\|25011575, gi\|... - gi\|25011575\|ref\|NP_735970.1\| glutamine ABC transporter permease and substrate binding protein [Strep... gi\|22534494, gi\|... - gi\|22537609\|ref\|NP_688460.1\| glutamine ABC transporter, glutamine-binding protein/permease protein [... gi\|77176225, gi\|... - gi\|77405223\|ref\|ZP_00782321.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre... gi\|77414125, gi\|... - gi\|77414125\|ref\|ZP_00790292.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre... gi\|76587007, gi\|... - gi\|76797646\|ref\|ZP_00779916.1\| glutamine ABC transporter permease and substrate binding protein [Str...	179.0	[0..5]	[217..512]
gi\|76788581, gi\|... - gi\|76788581\|ref\|YP_330104.1\| polar amino acid ABC transporter permease/substrate-binding protein [St...	179.0	[0..5]	[217..512]
gi\|77411077, gi\|... - gi\|77411077\|ref\|ZP_00787431.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre...	179.0	[0..5]	[217..512]
gi\|14211227 - gi\|14211227\|gb\|AAK57382.1\|AF372619_1 GlnP [Streptococcus agalactiae] gi\|14211227 - gi\|14211227\|gb\|AAK57382.1\| GlnP [Streptococcus agalactiae]	179.0	[0..5]	[217..512]
gi\|125624721, gi... - gi\|125624721\|ref\|YP_001033204.1\| glutamine ABC transporter permease and substrate binding protein [L... gi\|62421458 - gi\|62421458\|gb\|AAX82492.1\| GlnP [Lactococcus lactis subsp. cremoris]	178.0	[0..5]	[217..499]
gi\|46880345, gi\|... - gi\|46907078\|ref\|YP_013467.1\| glutamine ABC transporter, permease/substrate-binding protein [Listeria... gi\|224503184 - gi\|224503184\|ref\|ZP_03671491.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|255520210 - gi\|255520210\|ref\|ZP_05387447.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|127632725, gi... - gi\|254832188\|ref\|ZP_05236843.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste...	177.0	[0..10]	[217..274]
gi\|254879962 - gi\|254879962\|ref\|ZP_05252672.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|254852338 - gi\|254852338\|ref\|ZP_05241686.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|254993068 - gi\|254993068\|ref\|ZP_05275258.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|47092054, gi\|... - gi\|47092054\|ref\|ZP_00229847.1\| glutamine ABC transporter, permease/substrate-binding protein [Lister... gi\|133735858, gi... - gi\|254931228\|ref\|ZP_05264587.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|153166167, gi... - gi\|153166167\|ref\|ZP_01926786.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|254823885 - gi\|254823885\|ref\|ZP_05228886.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|226223465, gi... - gi\|226223465\|ref\|YP_002757572.1\| Glutamine ABC transporter (binding and transport protein) [Listeria...	177.0	[0..10]	[217..274]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLELLNTDTL LRLWQGLFVT LEISFISIII TSIGGLFLGI LMSFKNTYIY AFCRLGLEFV  60
   61 RVMPLLVWLF VVYFGFPRWF GWDLSSVSAA IIVFSIWGCF EMMDLVRVSL QSIPKHQYES 120
  121 ASSLGLNTVQ SFAYVIIPQA MRRLTPMSMN LLTRMIKSTT FAYLIGAVEL VKVGQQIIEF 180
  181 HNRNDFAPFI IYGLIFFIFF ILCYPITLYS RKLEKKWS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.98824613202602	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
amino acid transmembrane transporter activity	1.12102819427113	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.918466003981509	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.890308406193876	bayes_pls_golite062009
catalytic activity	0.79821499476005	bayes_pls_golite062009
ion transmembrane transporter activity	0.67039520089395	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
amine transmembrane transporter activity	0.525383483850367	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: