YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57165889, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57165889, gi|....

Description	E-value	Query Range	Subject Range
gi\|157385355, gi... - gi\|157414391\|ref\|YP_001481647.1\| cytolethal distending toxin [Campylobacter jejuni subsp. jejuni 811... gi\|133251604, gi... - gi\|41387376\|gb\|AAS01599.1\| cytolethal distending toxin C [Campylobacter jejuni], gi\|133251604\|dbj\|BA...	287.0	[0..1]	[189..1]
gi\|86154075, gi\|... - gi\|86154075\|ref\|ZP_01072276.1\| Cytolethal distending toxin A/C family [Campylobacter jejuni subsp. j...	284.0	[0..1]	[189..1]
gi\|222824367, gi... - gi\|57241430\|ref\|ZP_00369376.1\| cytolethal distending toxin C [Campylobacter lari RM2100], gi\|5701776...	266.0	[0..1]	[188..1]
gi\|57016845, gi\|... - gi\|57242560\|ref\|ZP_00370498.1\| cytolethal distending toxin C [Campylobacter upsaliensis RM3195], gi\|...	259.0	[0..1]	[188..1]
gi\|133251647, gi... - gi\|65736482\|dbj\|BAD98507.1\| cytolethal distending toxin C [Campylobacter coli], gi\|133251661\|dbj\|BAF...	258.0	[0..1]	[188..1]
gi\|57020226, gi\|... - gi\|57168418\|ref\|ZP_00367552.1\| cytolethal distending toxin C [Campylobacter coli RM2228], gi\|5702022...	240.0	[0..12]	[188..1]
gi\|115499659, gi... - gi\|133251738\|dbj\|BAF49168.1\| cytolethal distending toxin C [Campylobacter fetus], gi\|133251730\|dbj\|B... gi\|85845042, gi\|... - gi\|86155235\|ref\|ZP_01073401.1\| Cytolethal distending toxin A/C family [Campylobacter fetus subsp. fe...	231.0	[0..3]	[188..2]
gi\|6606294 - gi\|6606294\|gb\|AAF19159.1\|AF163667_3 CdtC [Helicobacter hepaticus] gi\|32266947, gi\|... - gi\|32266947\|ref\|NP_860979.1\| cytolethal distending toxin CdtC [Helicobacter hepaticus ATCC 51449], g...	229.0	[0..1]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIITLFFM FITLAFATPT GDLKDFTEMV SIRSLETGIF LSAFRDTSKD PIDQNWNIKE  60
   61 IVLSDELKQK DKLADELPFG YVQFTNPKES DLCLAILEDG TFGAKSCQDD LKDGKLETVF 120
  121 SIMPTTTSAV QIRSLVLESD ECIVTFFNPN IPIQKRFGIA PCTLDPIFFA EVNELMIITP 180
  181 PLTAATPLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	2f2fC
Description:	No description for 2f2fC was found.

Predicted functions:

Term	Confidence	Notes
binding	0.341340645833797	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: