YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237134, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237134, gi|....

Description	E-value	Query Range	Subject Range
ACCD_TRIEI - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Trichodesmium erythraeum (strain ...	297.0	[0..1]	[278..1]
gi\|117624506, gi... - gi\|117624506\|ref\|YP_853419.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Esche... gi\|187771256, gi... - gi\|187775757\|ref\|ZP_02797960.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|188017314, gi... - gi\|188024699\|ref\|ZP_02773192.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|189404953, gi... - gi\|189404953\|ref\|ZP_02812235.2\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|227835726, gi... - gi\|227887376\|ref\|ZP_04005181.1\| acetyl-CoA carboxylase [Escherichia coli 83972], gi\|227835726\|gb\|EEJ... gi\|192932062, gi... - gi\|193062396\|ref\|ZP_03043491.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|237704795, gi... - gi\|237704795\|ref\|ZP_04535276.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Esc... gi\|194432917, gi... - gi\|194432917\|ref\|ZP_03065201.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Shigella... gi\|194436189, gi... - gi\|194436189\|ref\|ZP_03068291.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|91211613, gi\|... - gi\|91211613\|ref\|YP_541599.1\| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Escher... tr\|A0A0G3HQY2\|A0... - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain K12) GN=...	293.0	[0..1]	[279..29]
gi\|22295368, gi\|... - gi\|22299186\|ref\|NP_682433.1\| acetyl-CoA carboxylase subunit beta [Thermosynechococcus elongatus BP-1...	292.0	[0..1]	[278..1]
gi\|62180938, gi\|... - gi\|62180938\|ref\|YP_217355.1\| acetyl-CoA carboxylase beta subunit [Salmonella enterica subsp. enteric...	292.0	[0..1]	[279..27]
ACCD_SHISS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Shigella sonnei (strain Ss046) GN...	291.0	[0..1]	[279..1]
gi\|26109110, gi\|... - gi\|26248705\|ref\|NP_754745.1\| acetyl-CoA carboxylase beta subunit [Escherichia coli CFT073], gi\|26109...	291.0	[0..1]	[279..29]
gi\|192958428, gi... - gi\|75238099\|ref\|ZP_00722104.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli E11001...	291.0	[0..1]	[279..1]
ACCD_SALPA - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella paratyphi A (strain AT... ACCD_SALPA - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella paratyphi A GN=accD PE... ACCD_SALPK - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella paratyphi A (strain AK...	291.0	[0..1]	[279..1]
ACCD_ECO57 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O157:H7 GN=accD ... ACCD_ECOLI - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) - E... gi\|15802863, gi\|... - gi\|15802863\|ref\|NP_288890.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli O157:H7 EDL933], ... gi\|218361639, gi... - gi\|218554871\|ref\|YP_002387784.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli IAI1], gi\|218... EG10217 - acetyl-CoA carboxylase, beta (carboxyltransferase) subunit / Acetyl-CoA carboxylase, carboxyltransfe... gi\|218355770, gi... - gi\|218548229\|ref\|YP_002382020.1\| acetyl-CoA carboxylase subunit beta [Escherichia fergusonii ATCC 35... gi\|218428040, gi... - gi\|218690476\|ref\|YP_002398688.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli ED1a], gi\|218... gi\|218365998, gi... - gi\|218559229\|ref\|YP_002392142.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli S88], gi\|2183... gi\|218370778, gi... - gi\|218700792\|ref\|YP_002408421.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli IAI39], gi\|21... gi\|218695915, gi... - gi\|218695915\|ref\|YP_002403582.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli 55989], gi\|21... gi\|195183055 - gi\|195183055\|dbj\|BAG66615.1\| beta subunit of acetyl-CoA carboxylase [Escherichia coli O111:H-] gi\|218432943, gi... - gi\|218705846\|ref\|YP_002413365.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli UMN026], gi\|2... gi\|75209303, gi\|... - gi\|75209303\|ref\|ZP_00709543.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli B171],... gi\|238901491, gi... - gi\|238901491\|ref\|YP_002927287.1\| acetyl-CoA carboxylase, beta (carboxyltranferase) subunit [Escheric... gi\|190900282, gi... - gi\|75226801\|ref\|ZP_00713731.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli B7A], ... gi\|242377949, gi... - gi\|251785676\|ref\|YP_002999980.1\| hypothetical protein B21_02201 [Escherichia coli BL21], gi\|24237794... gi\|75259775 - gi\|75259775\|ref\|ZP_00731077.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli E22] gi\|253978393, gi... - gi\|254289086\|ref\|YP_003054834.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli BL21(DE3)], g... EG10217 - acetyl-CoA carboxylase, beta (carboxyltransferase) subunit / Acetyl-CoA carboxylase, carboxyltransfe... gi\|188487642, gi... - gi\|75515681\|ref\|ZP_00737816.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli 53638]... gi\|253974226, gi... - gi\|254162325\|ref\|YP_003045433.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli B str. REL606... gi\|1799709, gi\|8... - gi\|89109136\|ref\|AP_002916.1\| acetylCoA carboxylase, beta (carboxyltranferase) subunit [Escherichia c... gi\|254593609, gi... - gi\|254794209\|ref\|YP_003079046.1\| acetyl-CoA carboxylase, beta (carboxyltranferase) subunit [Escheric... gi\|13362670, gi\|... - gi\|15832454\|ref\|NP_311227.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli O157:H7 str. Saka... gi\|124526481, gi... - gi\|124526481\|ref\|ZP_01698434.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|83570128 - gi\|83570128\|ref\|ZP_00921575.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Shigella dysenteriae 10... gi\|83588299 - gi\|83588299\|ref\|ZP_00926924.1\| COG0777: Acetyl-CoA carboxylase beta subunit [Escherichia coli 101-1] ACCD_ECO24 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O139:H28 (strain... ACCD_ECOUT - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain UTI89 / ... ACCD_ECOHS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O9:H4 (strain HS... gi\|195935695 - gi\|195935695\|ref\|ZP_03081077.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli O157:H7 str. E... ACCD_ECOSM - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain SMS-3-5 ... gi\|208735063, gi... - gi\|208813786\|ref\|ZP_03255115.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|208807491, gi... - gi\|208807491\|ref\|ZP_03249828.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|209399397, gi... - gi\|209399397\|ref\|YP_002271725.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheri... gi\|208738564, gi... - gi\|208818441\|ref\|ZP_03258761.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escheric... gi\|215487529, gi... - gi\|215487529\|ref\|YP_002329960.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli O127:H6 str. ... gi\|209913075, gi... - gi\|209919816\|ref\|YP_002293900.1\| acetyl-CoA carboxylase subunit beta [Escherichia coli SE11], gi\|209... gi\|168755073, gi... - gi\|189357757\|gb\|EDU76176.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... ACCD_ECOK1 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli O1:K1 / APEC GN=... gi\|168767947, gi... - gi\|189362912\|gb\|EDU81331.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... gi\|189368284, gi... - gi\|189368284\|gb\|EDU86700.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... gi\|189379043, gi... - gi\|189379043\|gb\|EDU97459.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... gi\|189002076, gi... - gi\|189002076\|gb\|EDU71062.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Escherichia ... ACCD_ECODH - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain K12 / DH... ACCD_ECOLC - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Escherichia coli (strain ATCC 873...	290.0	[0..1]	[279..1]
gi\|81591786 - gi\|81591786\|sp\|Q8XFJ5.1\|ACCD_SALTI RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase ... ACCD_SALPB - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella paratyphi B (strain AT... gi\|221271887 - gi\|221271887\|sp\|Q57LY8.2\|ACCD_SALCH RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase... gi\|213852687 - gi\|213852687\|ref\|ZP_03382219.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|214002038 - gi\|214002038\|ref\|ZP_03412773.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|224467671, gi... - gi\|224583144\|ref\|YP_002636942.1\| acetyl-CoA carboxylase beta subunit [Salmonella enterica subsp. ent... gi\|81571880 - gi\|81571880\|sp\|Q7CQ41.1\|ACCD_SALTY RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase ... ACCD_SALEP - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella enteritidis PT4 (strai... gi\|213161332 - gi\|213161332\|ref\|ZP_03347042.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|213426979 - gi\|213426979\|ref\|ZP_03359729.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|213622846 - gi\|213622846\|ref\|ZP_03375629.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... ACCD_SALDC - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella dublin (strain CT_0202... gi\|199603616, gi... - gi\|200386518\|ref\|ZP_03213130.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonel... gi\|204929109, gi... - gi\|204929109\|ref\|ZP_03220252.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonel... ACCD_SALG2 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella gallinarum (strain 287... gi\|29136638, gi\|... - gi\|29141013\|ref\|NP_804355.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. enteric... gi\|16761291 - gi\|16761291\|ref\|NP_456908.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. enteric... ACCD_SALTI - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella typhi GN=accD PE=3 SV=... ACCD_SALTY - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella typhimurium (strain LT... ACCD_SALTY - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella typhimurium GN=accD PE... ACCD_SALCH - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella choleraesuis GN=accD P... lcl\|NC_016856.1_... - [gene=accD] [protein=acetyl-CoA carboxylase subunit beta] [protein_id=YP_005238449.1] [location=comp... gi\|194459188, gi... - gi\|194472824\|ref\|ZP_03078808.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonel... ACCD_SALSV - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella schwarzengrund (strain... ACCD_SALA4 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella agona (strain SL483) G... gi\|197240961, gi... - gi\|197262706\|ref\|ZP_03162780.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonel... gi\|168261610, gi... - gi\|205349406\|gb\|EDZ36037.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... gi\|205344775, gi... - gi\|205344775\|gb\|EDZ31539.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... ACCD_SALNS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella newport (strain SL254)... ACCD_SALHS - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella heidelberg (strain SL4... gi\|238912355 - gi\|238912355\|ref\|ZP_04656192.1\| acetyl-CoA carboxylase subunit beta [Salmonella enterica subsp. ente... gi\|205328777, gi... - gi\|205328777\|gb\|EDZ15541.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... ACCD_SALPB - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella paratyphi B (strain AT... gi\|205335653, gi... - gi\|205335653\|gb\|EDZ22417.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... gi\|197289728, gi... - gi\|197289728\|gb\|EDY29091.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... gi\|168242492, gi... - gi\|205338503\|gb\|EDZ25267.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e... ACCD_SALCH - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Salmonella choleraesuis (strain S... gi\|167549627, gi... - gi\|205325252\|gb\|EDZ13091.1\| acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Salmonella e...	290.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFADIFSKI RRQQPSVKEA PNHWVKCQSC HALMYYKEIE SCFNVCPKCN YHMRISADER  60
   61 IKLLSDEGSF IEYDANLEAI DPLKFVDSKS YKKRLSEGES KTGRKSSVIS GECEINGLKT 120
  121 QLVVFDFSFM GGSLGSVEGE KIVRAIQRAI TSKTSLVIVS ASGGARMQES TYSLMQMSKT 180
  181 SAALKLLSKE KLPYISILTD PTMGGVSASF AWLGDLIIAE PEALVGFAGA RVIKQTIGAD 240
  241 LPEGFQKAEF LLEHGLIDAI VERGEQKQYL SDVLKFFSGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	2f9yB
Description:	No description for 2f9yB was found.

Predicted functions:

Term	Confidence	Notes
acetyl-CoA carboxylase activity	10.6452464693016	bayes_pls_golite062009
CoA carboxylase activity	10.4560118435089	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	10.291155621143	bayes_pls_golite062009
ligase activity	5.44906329604668	bayes_pls_golite062009
biotin carboxylase activity	4.73758144982083	bayes_pls_golite062009
enoyl-CoA hydratase activity	2.20341273353803	bayes_pls_golite062009
catalytic activity	1.46154163027498	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	0.71437881404683	bayes_pls_golite062009
dodecenoyl-CoA delta-isomerase activity	0.712418056146834	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds	0.0918189681606029	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: