YRC Public Data Repository - Protein Structure Prediction

Protein:	RUXE_BOVIN
Organism:	Bos taurus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUXE_BOVIN.

Description	E-value	Query Range	Subject Range
SNRPEL1 - small nuclear ribonucleoprotein polypeptide E-like 1	9.0E-24	[1..92]	[1..92]
gi\|55632867 - gi\|55632867\|ref\|XP_520443.1\| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like 1 [Pan tr...	1.0E-23	[1..92]	[1..92]
gi\|27707378, gi\|... - gi\|62667426\|ref\|XP_341121.2\| PREDICTED: similar to small nuclear ribonucleoprotein E [Rattus norvegi...	2.0E-23	[1..92]	[1..92]
gi\|47227397 - gi\|47227397\|emb\|CAF96946.1\| unnamed protein product [Tetraodon nigroviridis]	1.0E-22	[1..92]	[1..92]
RUXE_DANRE - Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3 SV=1	3.0E-22	[1..92]	[1..92]
gi\|94388852 - gi\|94388852\|ref\|XP_919276.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	4.0E-22	[2..90]	[140..226]
gi\|148226114, gi... - gi\|49256559\|gb\|AAH72956.1\| MGC82471 protein [Xenopus laevis], gi\|148226114\|ref\|NP_001085570.1\| MGC82...	7.0E-22	[1..92]	[1..92]
gi\|89268183, gi\|... - gi\|89268183\|emb\|CAJ83657.1\| small nuclear ribonucleoprotein polypeptide E [Xenopus tropicalis], gi\|5...	8.0E-22	[1..92]	[1..92]
gi\|115978404, gi... - gi\|72111474\|ref\|XP_801807.1\| PREDICTED: similar to small nuclear ribonucleoprotein E isoform 2 [Stro...	1.0E-21	[1..91]	[1..89]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYRGQGQKV QKVMVQPINL IFRYLQNRSR IQVWLYEQVN MRIEGCIIGF DEYMNLVLDD  60
   61 AEEIHSKTKS RKQLGRIMLK GDNITLLQSV SN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.221849
Match:	2fwkA
Description:	Crystal structure of Cryptosporidium parvum U6 snRNA-associated Sm-like protein LSm5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.49177223698264	bayes_pls_golite062009
protein binding	0.625703802792387	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: