YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126197717, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	377 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126197717, gi....

Description	E-value	Query Range	Subject Range
DNAJ_PSEA7 - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain PA7) GN=dnaJ PE=3 SV=1	0.0	[1..377]	[1..377]
DNAJ_PSEPK - Chaperone protein DnaJ OS=Pseudomonas putida (strain KT2440) GN=dnaJ PE=3 SV=1 tr\|E4R635\|E4R635... - Chaperone protein DnaJ OS=Pseudomonas putida (strain BIRD-1) GN=dnaJ PE=3 SV=1	0.0	[1..377]	[1..375]
gi\|53612269, gi\|... - gi\|67158732\|ref\|ZP_00419593.1\| DnaJ central domain (CXXCXGXG):Heat shock protein DnaJ, N-terminal:Ch... DNAJ_AZOVD - Chaperone protein DnaJ OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dnaJ PE=3 SV=1	0.0	[1..377]	[1..375]
gi\|194564151, gi... - gi\|84360930\|ref\|ZP_00985617.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...	0.0	[1..375]	[1..376]
DNAJ_BURCE - Chaperone protein dnaJ - Burkholderia cepacia (Pseudomonas cepacia) DNAJ_BURML - (Q5NSW9) Chaperone protein dnaJ DNAJ_BURM1 - Chaperone protein DnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1	0.0	[1..375]	[1..376]
DNAJ_BURTA - Chaperone protein DnaJ OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 10... gi\|167618794 - gi\|167618794\|ref\|ZP_02387425.1\| chaperone protein DnaJ [Burkholderia thailandensis Bt4] gi\|167580690 - gi\|167580690\|ref\|ZP_02373564.1\| chaperone protein DnaJ [Burkholderia thailandensis TXDOH]	0.0	[1..375]	[1..376]
gi\|95109000 - gi\|95109000\|emb\|CAK13696.1\| Chaperone protein DnaJ [Pseudomonas] DNAJ_PSEE4 - Chaperone protein DnaJ OS=Pseudomonas entomophila (strain L48) GN=dnaJ PE=3 SV=1	0.0	[1..377]	[1..375]
gi\|254194930, gi... - gi\|67761333\|ref\|ZP_00500043.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|134248167, gi... - gi\|134280160\|ref\|ZP_01766871.1\| chaperone protein DnaJ [Burkholderia pseudomallei 305], gi\|134248167... gi\|167740044 - gi\|167740044\|ref\|ZP_02412818.1\| chaperone protein DnaJ [Burkholderia pseudomallei 14] DNAJ_BURP0 - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain 1106a) GN=dnaJ PE=3 SV=1 gi\|167920345 - gi\|167920345\|ref\|ZP_02507436.1\| chaperone protein DnaJ [Burkholderia pseudomallei BCC215] gi\|242139778, gi... - gi\|82538618\|ref\|ZP_00897611.1\| hypothetical protein Bpse110_02000313 [Burkholderia pseudomallei 1106... DNAJ_BURP6 - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain 668) GN=dnaJ PE=3 SV=1 gi\|237813677, gi... - gi\|237813677\|ref\|YP_002898128.1\| chaperone protein DnaJ [Burkholderia pseudomallei MSHR346], gi\|2375...	0.0	[1..375]	[1..376]
gi\|167721070 - gi\|167721070\|ref\|ZP_02404306.1\| chaperone protein DnaJ [Burkholderia pseudomallei DM98] gi\|167817260 - gi\|167817260\|ref\|ZP_02448940.1\| chaperone protein DnaJ [Burkholderia pseudomallei 91] DNAJ_BURPS - Chaperone protein DnaJ OS=Burkholderia pseudomallei GN=dnaJ PE=3 SV=1 gi\|167895740 - gi\|167895740\|ref\|ZP_02483142.1\| chaperone protein DnaJ [Burkholderia pseudomallei 7894] gi\|167904131 - gi\|167904131\|ref\|ZP_02491336.1\| chaperone protein DnaJ [Burkholderia pseudomallei NCTC 13177] gi\|167825671 - gi\|167825671\|ref\|ZP_02457142.1\| chaperone protein DnaJ [Burkholderia pseudomallei 9] gi\|167847158 - gi\|167847158\|ref\|ZP_02472666.1\| chaperone protein DnaJ [Burkholderia pseudomallei B7210] DNAJ_BURP1 - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain 1710b) GN=dnaJ PE=3 SV=1 gi\|194569444, gi... - gi\|83680877\|ref\|ZP_00942581.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|67674194, gi\|... - gi\|99913736\|ref\|ZP_01320333.1\| hypothetical protein Bpse1_03000024 [Burkholderia pseudomallei 1655],... gi\|90295004, gi\|... - gi\|90295004\|ref\|ZP_01214595.1\| hypothetical protein Bpse17_02000492 [Burkholderia pseudomallei 1710a... gi\|254191597, gi... - gi\|67757438\|ref\|ZP_00496314.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|167912391 - gi\|167912391\|ref\|ZP_02499482.1\| chaperone protein DnaJ [Burkholderia pseudomallei 112] gi\|217395826, gi... - gi\|217420414\|ref\|ZP_03451919.1\| chaperone protein DnaJ [Burkholderia pseudomallei 576], gi\|217395826... DNAJ_BURPS - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain K96243) GN=dnaJ PE=3 SV=1 gi\|226194162, gi... - gi\|226194162\|ref\|ZP_03789761.1\| chaperone protein DnaJ [Burkholderia pseudomallei Pakistan 9], gi\|22...	0.0	[1..375]	[1..376]
tr\|I7C0C3\|I7C0C3... - Chaperone protein DnaJ OS=Pseudomonas putida (strain DOT-T1E) GN=dnaJ PE=3 SV=1 DNAJ_PSEP1 - Chaperone protein DnaJ OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dnaJ PE=3 SV=1	0.0	[1..377]	[1..374]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRDFYEVL GVERGASEAD LKKAYRRLAM KYHPDRNPGD KEAEDKFKEA NEAYEVLSDA  60
   61 SKRAAYDQYG HAGVDPNMGG GAGAGFGGAS F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	1bq0A
Description:	J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
unfolded protein binding	3.04403163860617	bayes_pls_golite062009
binding	2.63138872417193	bayes_pls_golite062009
heat shock protein binding	2.17994194200939	bayes_pls_golite062009
chaperone binding	1.61155546076854	bayes_pls_golite062009
protein binding	1.60937254813642	bayes_pls_golite062009
transporter activity	0.891062661562858	bayes_pls_golite062009
Hsp70 protein binding	0.541755903922701	bayes_pls_golite062009
transcription regulator activity	0.536114430470912	bayes_pls_golite062009
substrate-specific transporter activity	0.491842023249737	bayes_pls_golite062009
nucleic acid binding	0.423488346839872	bayes_pls_golite062009
DNA binding	0.24127751940041	bayes_pls_golite062009
catalytic activity	0.106988907594358	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [92-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDIFGDVFSD FFGGGGARGG SRGGAQRGAD LRYTLDLDLE EAVRGTTVTI RVPTLVGCKT  60
   61 CNGSGAKPGT TPVTCTTCGG IGQVRMQQGF FSVQQTCPRC HGTGKMISDP CGSCHGQGRV 120
  121 EEQKTLSVKV PAGVDTGDRI RLTGEGEAGS MGGPAGDLYV VVNVREHPIF QRDGKHLYCE 180
  181 VPISFADAAL GGELEVPTLD GRVKLKIPES TQTGKLFRLR GKGVAPVRGG GAGDLMCKVV 240
  241 VETPVNLDKR QRELLEEFRK SLQSDTSHSP KASGWFEGMK RFFDDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.09691
Match:	1nltA
Description:	The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.7298921704023	bayes_pls_golite062009
unfolded protein binding	2.04158808514315	bayes_pls_golite062009
protein binding	1.57926302986794	bayes_pls_golite062009
protein disulfide isomerase activity	0.290861970307477	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds	0.290861970307477	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups	0.0964866497718595	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: