YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61358698, gi\|...
Organism:	synthetic construct
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61358698, gi|....

Description	E-value	Query Range	Subject Range
gi\|126540523, gi... - gi\|56237886\|emb\|CAI26064.1\| complement component 1, q subcomponent binding protein [Mus musculus], g...	1.0E-98	[1..282]	[1..279]
gi\|109112933 - gi\|109112933\|ref\|XP_001100940.1\| PREDICTED: similar to complement component 1, q subcomponent bindin...	3.0E-98	[1..282]	[1..281]
C1QBP_RAT - Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Rattus norvegicus GN=C1qbp P...	1.0E-97	[1..282]	[1..279]
gi\|54696656, gi\|... - gi\|61368789\|gb\|AAX43237.1\| complement component 1 q subcomponent binding protein [synthetic construc...	9.0E-96	[1..282]	[1..282]
C1QBP_CHLAE - Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Chlorocebus aethiops GN=C1QB...	2.0E-95	[1..282]	[1..282]
gi\|114665950, gi... - gi\|114665952\|ref\|XP_511993.2\| PREDICTED: complement component 1, q subcomponent binding protein isof...	3.0E-95	[1..282]	[1..282]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPLLRCVPR VLGSSVAGLR AAAPASPFRQ LLQPAPRLCT RPFGLLSVRA GSERRPGLLR  60
   61 PRGPCACGCG CGSLHTDGDK AFVDFLSDEI KEERKIQKHK TLPKMSGGWE LELNGTEAKL 120
  121 VRKVAGEKIT VTFNINNSIP PTFDGEEEPS QGQKVEEQEP ELTSTPNFVV EVIKNDDGKK 180
  181 ALVLDCHYPE DEVGQEDEAE SDIFSIREVS FQSTGESEWK DTNYTLNTDS LDWALYDHLM 240
  241 DFLADRGVDN TFADELVELS TALEHQEYIT FLEDLKSFVK SQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.30103
Match:	1p32A
Description:	Acidic mitochondrial matrix protein p32
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.14402816172244	bayes_pls_golite062009
opsonin binding	0.84592190994393	bayes_pls_golite062009
complement binding	0.57175724197635	bayes_pls_golite062009
protein binding	0.504674818832231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: