Protein: | YHDD_SCHPO |
Organism: | Schizosaccharomyces pombe 972h- |
Length: | 618 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHDD_SCHPO.
Description | E-value | Query Range |
Subject Range |
|
244.0 | [0..1] | [614..53] |
|
237.0 | [0..19] | [616..26] |
|
237.0 | [0..1] | [617..51] |
|
237.0 | [0..2] | [603..18] |
|
235.0 | [0..7] | [616..41] |
|
235.0 | [0..7] | [616..41] |
|
234.0 | [0..4] | [616..29] |
|
233.0 | [0..2] | [617..47] |
Region A: Residues: [1-148] |
1 11 21 31 41 51 | | | | | | 1 MQMKPRQDKK NQEIFRISCQ RCRQRKIKCD RLHPCFQCVK SNSQCFYPED PIRRRAPKEY 60 61 VEALERQIAF FEAFVKKLAK VGSDEQSLMI QDMNNKIVNE GNEYDQTPDI SARKRRKHFR 120 121 MLPQNNFRYF QFYGTTNVIS ASNLTTTS |
Detection Method: | |
Confidence: | 3.09691 |
Match: | 1d66A |
Description: | Gal4; CD2-Gal4 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
binding | 2.91929847152301 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
Region A: Residues: [149-275] |
1 11 21 31 41 51 | | | | | | 1 EIPTFKFPIF SKRKYNDTEN LYEQPFHLEF DTCQELLSLF FLKQYHNFMF VFRDYFIRDF 60 61 ELGGGPYYSQ WLLFAICSIG AMISPDDDLK NLSNTLANIA EKWVLDEGLN SPDITTLQTL 120 121 LVLGIRE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [276-350] |
1 11 21 31 41 51 | | | | | | 1 IGRGLTFKGW LFSGMAFRLV YDMGLHLDPD HWDHSEESRI DREVRRRCFW GCFTLDKLIS 60 61 LCYGRPPGLY LKQTD |
Detection Method: | |
Confidence: | 33.920819 |
Match: | PF04082.9 |
Description: | No description for PF04082.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [351-469] |
1 11 21 31 41 51 | | | | | | 1 VRNTTQLPYI SELDEPFEIF NKKSELFAAV SAGEDRRGLV QFWLNQVELC KIIHRMLTEV 60 61 FEDRTSSVLE ASINNIHTEL QKWIADIPME LQWNTRSQKE TSSTVLLLHM LYHSVIIIL |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [470-618] |
1 11 21 31 41 51 | | | | | | 1 NRPSDDNYLK LDNTERYTFE ICWKSAKTIV QLLKIYFKKY DADCLPMTFI HIATSAARII 60 61 LVKLNENIPE DGDVCNIYLE IITNALDVCA NVWPLASQAS RAILNAYKSC ATSPKENNED 120 121 SLPLQRSPSL DDVSRFDSLD YIFSPNVKY |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.