YRC Public Data Repository - Protein Structure Prediction

Protein:	MU178_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MU178_SCHPO.

Description	E-value	Query Range	Subject Range
orf19.185 - orf19.185 CGDID:CAL0003248 Assembly 19, Contig19-10044 (5622, 6728) CDS, translated using codon tabl... gi\|68491154, gi\|... - gi\|68491154\|ref\|XP_710613.1\| possible mitochondrial ribosomal large subunit protein MRP51p [Candida ...	179.0	[0..5]	[151..10]
RT51_ASHGO - 37S ribosomal protein MRP51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC... RT51_ASHGO - 40S ribosomal protein MRP51, mitochondrial OS=Ashbya gossypii GN=MRP51 PE=3 SV=1	173.0	[0..3]	[156..6]
YFHI_SCHPO - Uncharacterized protein C23A1.18c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1... mrp51 - mitochondrial ribosomal protein subunit L51-b	172.0	[0..17]	[164..4]
gi\|37931732 - gi\|37931732\|gb\|AAP69230.1\| small subunit ribosomal protein [Torulaspora delbrueckii]	168.0	[0..3]	[135..4]
YHS3_LACK1 - Uncharacterized protein in HIS3 3'region (Fragment) OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3... YHS3_SACKL, YHS3... - Uncharacterized protein in HIS3 3'region (Fragment) OS=Saccharomyces kluyveri PE=4 SV=1, Uncharacter...	162.0	[0..9]	[135..1]
MRP51 - Mitochondrial ribosomal protein of the small subunit; MRP51 exhibits genetic interactions with mutat... RT51_YEAST - 37S ribosomal protein MRP51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...	150.0	[0..1]	[158..1]
gi\|67539616, gi\|... - gi\|67539616\|ref\|XP_663582.1\| hypothetical protein AN5978.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	149.0	[0..4]	[116..11]
gi\|49644260, gi\|... - gi\|50310209\|ref\|XP_455124.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644260\|emb\|CAG9783... gi\|49644260\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	145.0	[0..3]	[150..4]
gi\|145014846, gi... - gi\|39944202\|ref\|XP_361638.1\| hypothetical protein MGG_04112 [Magnaporthe grisea 70-15], gb\|EAA50353....	139.0	[0..6]	[102..13]

Back

Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFPDLLRCS RAVSLARPDL PRNSPDVYDT KIPILQAITA KKCQRFRGDW GAKRKLPILK  60
   61 NRHISIQKFD TFEHQCAFIS SDRFVRTLKR IYDLKLPVPL NDYEQISPYL LQKYNTFSSS 120
  121 NPKSRPTLPP GILYAKLKLL DSFSDSEKKR LSLVSFIQTK KVPLPFTYGK FAPDSKECLF 180
  181 GVSGVIAATS LKGITSTKNR YVIRSLNVDE TGKTIPNITR ENRSI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.207	0.001	translational initiation	a.141.1	Frizzled cystein-rich domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits