YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPR_PHOLL
Organism:	Photorhabdus luminescens subsp. laumondii
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPR_PHOLL.

Description	E-value	Query Range	Subject Range
gi\|227080881, gi... - gi\|227080881\|ref\|YP_002809432.1\| putative trp operon repressor [Vibrio cholerae M66-2], gi\|227008769... gi\|121587777, gi... - gi\|121587777\|ref\|ZP_01677537.1\| trp operon repressor, putative [Vibrio cholerae 2740-80], gi\|1215480... gi\|126510732, gi... - gi\|153818710\|ref\|ZP_01971377.1\| trp operon repressor, putative [Vibrio cholerae NCTC 8457], gi\|12651... gi\|254846736, gi... - gi\|254851031\|ref\|ZP_05240381.1\| trp operon repressor [Vibrio cholerae MO10], gi\|254846736\|gb\|EET2515... gi\|153822748, gi... - gi\|153822748\|ref\|ZP_01975415.1\| trp operon repressor, putative [Vibrio cholerae B33], gi\|126519731\|g... gi\|9655142, gi\|1... - gi\|9655142\|gb\|AAF93866.1\| trp operon repressor, putative [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11356017 - gi\|11356017\|pir\|\|G82290 probable trp operon repressor VC0701 [imported] - Vibrio cholerae (strain N1...	129.0	[0..5]	[105..10]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNHLTDPA LSPQDHEDWQ CFVTLLQQAF AENLQHPILQ LLLTPDERTA LATRVRIIKE  60
   61 LMSGKMSQRE LKNELGVGIA TITRGSNSLK FASNDVKAWL EQQLLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	3wrpA
Description:	FLEXIBILITY OF THE DNA-BINDING DOMAINS OF TRP REPRESSOR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.49137583648289	bayes_pls_golite062009
DNA binding	1.47393364683412	bayes_pls_golite062009
binding	0.833538516780913	bayes_pls_golite062009
sequence-specific DNA binding	0.47954468042493	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: