YRC Public Data Repository - Protein Structure Prediction

Protein:	RBFA_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBFA_CAMJR.

Description	E-value	Query Range	Subject Range
gi\|71911221, gi\|... - gi\|71911221\|ref\|YP_282771.1\| ribosome-binding factor A [Streptococcus pyogenes MGAS5005], gi\|7185400...	148.0	[0..1]	[116..46]
RBFA_BACLD - Ribosome-binding factor A OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	147.0	[0..4]	[120..1]
RBFA_BACHD - Ribosome-binding factor A OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RBFA_BACHD - Ribosome-binding factor A OS=Bacillus halodurans GN=rbfA PE=3 SV=1	147.0	[0..3]	[116..1]
RBFA_ALKEH - Ribosome-binding factor A OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	147.0	[0..1]	[119..1]
RBFA_GEOKA - Ribosome-binding factor A OS=Geobacillus kaustophilus (strain HTA426) GN=rbfA PE=3 SV=2 RBFA_GEOKA - Ribosome-binding factor A OS=Geobacillus kaustophilus GN=rbfA PE=3 SV=2	145.0	[0..4]	[118..1]
gi\|213928496, gi... - gi\|213966646\|ref\|ZP_03394797.1\| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1], gi\|2... RBFA_PSESM - Ribosome-binding factor A OS=Pseudomonas syringae pv. tomato GN=rbfA PE=3 SV=1 RBFA_PSESM - Ribosome-binding factor A OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rbfA PE=3 SV=1	145.0	[0..1]	[119..1]
gi\|90309887, gi\|... - gi\|90409002\|ref\|ZP_01217132.1\| ribosome-binding factor A [Psychromonas sp. CNPT3], gi\|90309887\|gb\|EA...	145.0	[0..1]	[119..1]
gi\|98660533 - gi\|98660533\|dbj\|GAA02246.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	145.0	[0..3]	[116..39]
RBFA_ACTSZ - Ribosome-binding factor A OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rbfA PE=3 SV=...	144.0	[0..1]	[118..1]
RBFA_PSYIN - Ribosome-binding factor A OS=Psychromonas ingrahamii (strain 37) GN=rbfA PE=3 SV=1	144.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSEIKKLR TESILKELIP EALANLDDEN LKNLCVVDVE CKKGRYDAFV YLDKMFFNVH  60
   61 EQEKILSSLK KASRALQNYC MSEQGWYRCP NFHFKFDDRL EYQNHMDALF EKIKKDKNES 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1josA
Description:	Ribosome-binding factor A, RbfA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	1.78763405231681	bayes_pls_golite062009
nucleic acid binding	0.83586229977035	bayes_pls_golite062009
catalytic activity	0.640244199484628	bayes_pls_golite062009
binding	0.519389427071401	bayes_pls_golite062009
rRNA binding	0.22053492547658	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: