YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPP_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPP_CAMJR.

Description	E-value	Query Range	Subject Range
CLPP_THIDA - ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=...	273.0	[0..2]	[193..17]
CLPP_VIBTL - ATP-dependent Clp protease proteolytic subunit OS=Vibrio tasmaniensis (strain LGP32) GN=clpP PE=3 SV... gi\|84387735, gi\|... - gi\|84387735\|ref\|ZP_00990751.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus 12B...	270.0	[0..2]	[192..16]
gi\|90579278, gi\|... - gi\|90579278\|ref\|ZP_01235088.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum S14],... gi\|89073230, gi\|... - gi\|89073230\|ref\|ZP_01159760.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp. SK...	270.0	[0..2]	[192..16]
gi\|85833328, gi\|... - gi\|86148885\|ref\|ZP_01067136.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222], g...	270.0	[0..2]	[192..6]
CLPP_PHOPR - ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum GN=clpP PE=3 SV=2 CLPP_PHOPR - ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum (strain SS9) GN=clpP PE=3...	270.0	[0..2]	[192..8]
gi\|62179060, gi\|... - gi\|62179060\|ref\|YP_215477.1\| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica sub...	269.0	[0..2]	[193..55]
gi\|90410782, gi\|... - gi\|90410782\|ref\|ZP_01218797.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium profun...	269.0	[0..2]	[192..16]
gi\|46914236, gi\|... - gi\|54309798\|ref\|YP_130818.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium profundu... gi\|27363512 - ref\|NP_759040.1\| ATP-dependent Clp protease, proteolytic subunit [Photobacterium profundum SS9]	269.0	[0..2]	[192..16]
CLPP_AROAE - ATP-dependent Clp protease proteolytic subunit OS=Aromatoleum aromaticum (strain EbN1) GN=clpP PE=3 ...	268.0	[0..2]	[192..19]
CLPP_SALNS - ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=... gi\|195631923, gi... - gi\|195631923\|gb\|EDX50443.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enteric... gi\|168261116, gi... - gi\|205350070\|gb\|EDZ36701.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enteric... gi\|197289522, gi... - gi\|197289522\|gb\|EDY28885.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella enteric... CLPP_SALCH - ATP-dependent Clp protease proteolytic subunit OS=Salmonella choleraesuis GN=clpP PE=3 SV=2 CLPP_SALTI - ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1 CLPP_SALEP - ATP-dependent Clp protease proteolytic subunit OS=Salmonella enteritidis PT4 (strain P125109) GN=clp... CLPP_SALTY - ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1 CLPP_SALTY - ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / AT... gi\|204930575, gi... - gi\|204930575\|ref\|ZP_03221505.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella ent... CLPP_SALTY - ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1 CLPP_SALSV - ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clp... CLPP_SALTI - ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1 CLPP_SALHS - ATP-dependent Clp protease proteolytic subunit OS=Salmonella heidelberg (strain SL476) GN=clpP PE=3 ... gi\|29142800, gi\|... - gi\|29142800\|ref\|NP_806142.1\| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica sub... gi\|16759428 - gi\|16759428\|ref\|NP_455045.1\| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica sub... CLPP_SALCH - ATP-dependent Clp protease proteolytic subunit OS=Salmonella choleraesuis (strain SC-B67) GN=clpP PE... gi\|213646005 - gi\|213646005\|ref\|ZP_03376058.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella ent... gi\|213425858 - gi\|213425858\|ref\|ZP_03358608.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella ent... gi\|213419494 - gi\|213419494\|ref\|ZP_03352560.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella ent... lcl\|NC_016856.1_... - [gene=clpP] [protein=ATP-dependent Clp protease proteolytic subunit] [protein_id=YP_005236144.1] [lo... gi\|213025962 - gi\|213025962\|ref\|ZP_03340409.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella ent... gi\|214001925 - gi\|214001925\|ref\|ZP_03412660.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella ent... gi\|213853068 - gi\|213853068\|ref\|ZP_03382600.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Salmonella ent... gi\|238911421 - gi\|238911421\|ref\|ZP_04655258.1\| ATP-dependent Clp protease proteolytic subunit [Salmonella enterica ... CLPP_SALCH - ATP-dependent Clp protease proteolytic subunit OS=Salmonella choleraesuis GN=clpP PE=3 SV=2	267.0	[0..2]	[193..16]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIPYVIEKS SRGERSYDIY SRLLKDRIIM LSGEIHDELA ASIVAQLLFL EAEDPTKDIY  60
   61 LYINSPGGVI TSGFSIYDTM NYIKPDVCTI CIGQAASMGA FLLSCGAEGK RFALPNSRIM 120
  121 IHQPLGGARG QATDIEIQAK EILRLKTILN DILAKNTKQK VAKIAKDTER DFFMSAQEAK 180
  181 EYGLIDKVLE KSFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.522879
Match:	1tyfA
Description:	Clp protease, ClpP subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.46154163027498	bayes_pls_golite062009
CoA carboxylase activity	0.939626895227199	bayes_pls_golite062009
acetyl-CoA carboxylase activity	0.764444938444292	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.621229080200493	bayes_pls_golite062009
enoyl-CoA hydratase activity	0.620657548610719	bayes_pls_golite062009
hydrolase activity	0.534319520590169	bayes_pls_golite062009
binding	0.367666848528835	bayes_pls_golite062009
ligase activity	0.32092496884003	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: