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View Structure Prediction Details

Protein: CE40035
Organism: Caenorhabditis elegans
Length: 471 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40035.

Description E-value Query
Range
Subject
Range
gi|67668083, gi|... - gi|67668083|ref|ZP_00465278.1| General substrate transporter:Major facilitator superfamily [Burkhold...
236.0 [0..2] [457..1013]

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Predicted Domain #1
Region A:
Residues: [1-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCFTCSSFF GRLPMETDDP ILKRLPRGAR PWAVLVGGVM CMVTFGIVYT CGNLLPYLVS  60
   61 YFRWKMYPDM RTGQLIWLQT LLSGLPMGMV IGGLVERKFG GRAGALLGSI IYTIGVGSTF 120
  121 YSIQHSYAAT LLTMGGIASV GSSIAYSSIL PTAQRWFPDN VGLAGGIIIG GYGCGAFILS 180
  181 PLQTTFINPL DYRVNDQGFF TQEDLLERVP YVFIVMSIFF TVFQSIGLIF IGQPEGDIHV 240
  241 ETENLIGTNS EIRVEQARVW PQLRTTTFLV LFLSLTCNAV WVQLTSGLYK AYGQQFIDSD 300
  301 FFLSLIGSIS SIFNAGSRVF WGAIADTTSY QFSMSIVCSL GAVLAFSMPL VKMVSNDVLF 360
  361 LATVCLMFSC IGGTFSIFPY ITHKCFSKAN FSVMYGFLQC AVSVAGLIAG LISTHALSEI 420
  421 GFEYLFIVCG CFMLTSLFLT FIVHKTDLAQ LLVSAEREHL EEDENGYQVY Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.357285509021961 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle