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View Structure Prediction Details

Protein: PROK1_MOUSE
Organism: Mus musculus
Length: 105 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROK1_MOUSE.

Description E-value Query
Range		 Subject
Range
PROK1_RAT - Prokineticin-1 OS=Rattus norvegicus GN=Prok1 PE=3 SV=1
 168.0 [0..1] [105..1]
gi|114559007 - gi|114559007|ref|XP_001162989.1| PREDICTED: prokineticin 1 [Pan troglodytes]
PROK1 - prokineticin 1
 166.0 [0..1] [105..1]
gi|109013433 - gi|109013433|ref|XP_001101188.1| PREDICTED: similar to prokineticin 1 [Macaca mulatta]
 165.0 [0..1] [105..1]
gi|73959906 - gi|73959906|ref|XP_547234.2| PREDICTED: similar to prokineticin 1 [Canis familiaris]
 153.0 [0..1] [104..1]
BM8X_BOMMX - Prokineticin Bv8-like peptide 2 OS=Bombina maxima PE=1 SV=1
 144.0 [0..1] [97..1]
BV8_BOMVA - Prokineticin Bv8 OS=Bombina variegata PE=1 SV=1
 141.0 [0..1] [97..1]
BO8_BOMOR - Prokineticin Bo8 OS=Bombina orientalis PE=1 SV=1
 141.0 [0..1] [97..1]
gi|50760515 - gi|50760515|ref|XP_425816.1| PREDICTED: similar to prokineticin 1 [Gallus gallus]
 139.0 [0..15] [105..15]

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Predicted Domain #1
Region A:
Residues: [1-105] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGAVHIFIM LLLATASDCA VITGACERDI QCGAGTCCAI SLWLRGLRLC TPLGREGEEC  60
   61 HPGSHKIPFL RKRQHHTCPC SPSLLCSRFP DGRYRCFRDL KNANF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 1imtA
Description: MAMBA INTESTINAL TOXIN 1, NMR, 39 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
receptor binding 2.74936845623837 bayes_pls_golite062009
protein binding 1.72927214733574 bayes_pls_golite062009
G-protein-coupled receptor binding 1.47532551478533 bayes_pls_golite062009
binding 1.31058855384814 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle