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View Structure Prediction Details

Protein: gi|222424443, gi...
Organism: Arabidopsis thaliana
Length: 301 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222424443, gi....

Description E-value Query
Range
Subject
Range
gi|71675440, gi|... - gi|71675440|ref|ZP_00673185.1| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi|716...
247.0 [0..6] [300..1028]

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Predicted Domain #1
Region A:
Residues: [1-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFESNMVLQT LSSSSPPIHR LYLHHSQILP SSGSPSKISL QIHGRTLAIR SFHDYVFAEI  60
   61 SARGLPALNK ASLKKLPIKG STFLLGQSLL MVSAHPQLAA AAEIIKPEPI YEVGELFELS 120
  121 IQLSYLLLLL GLLGVGTFYV IRQVLVRREL DLSAKELQEQ VRSGDASATE LFELGAVMLR 180
  181 RKFYPAANKF LQQAIQKWDG DDQDLAQVYN ALGVSYVRED KLDKGIAQFE MAVKLQPGYV 240
  241 TAWNNLGDAY EKKKELPLAL NAFEEVLLFD PNNKVARPRR DALKDRVKLY KGVVAVKSKK 300
  301 R

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Detection Method: PSI-BLAST
Confidence: 44.69897
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.02652482814057 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle