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View Structure Prediction Details

Protein: gi|48310606, gi|...
Organism: Arabidopsis thaliana
Length: 164 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48310606, gi|....

Description E-value Query
Range
Subject
Range
gi|28611030 - gi|28611030|emb|CAD62368.1| chimeric SDH2-RPS14 protein [Triticum aestivum]
202.0 [0..11] [164..196]

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Predicted Domain #1
Region A:
Residues: [1-56]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLRRVLLN VTSYCQRSLT QSSYSTSGML SRSVVKHANN LGQIQARHFT TTLMKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.522879
Match: 1zoyB
Description: Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [57-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPKHSGTEQG VKRNSADHRR RLLAARFELR RKLYKAFCKD PDLPSEMRDK NRYKLSKLPR  60
   61 NSAFARIRNR CVFTGRSRSV TELFRVSRIV FRGLASKGAL MGITKSSW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.0
Match: 1vs5N
Description: No description for 1vs5N was found.

Predicted functions:

Term Confidence Notes
binding 0.270879137859077 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle