| Protein: | PRRP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 572 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRRP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
407.0 | [0..1] | [486..149] |
|
Region A: Residues: [1-345] |
1 11 21 31 41 51
| | | | | |
1 MLRLTCFTPS FSRACCPLFA MMLKVPSVHL HHPRFSPFRF YHTSLLVKGT RDRRLILVER 60
61 SRHLCTLPLA AAKQSAASPS ENLSRKAKKK AIQQSPEALL KQKLDMCSKK GDVLEALRLY 120
121 DEARRNGVQL SQYHYNVLLY VCSLAEAATE SSPNPGLSRG FDIFKQMIVD KVVPNEATFT 180
181 NGARLAVAKD DPEMAFDMVK QMKAFGIQPR LRSYGPALFG FCRKGDADKA YEVDAHMVES 240
241 EVVPEEPELA ALLKVSMDTK NADKVYKTLQ RLRDLVRQVS KSTFDMIEEW FKSEVATKTG 300
301 VKKWDVKKIR DAVVSGGGGW HGQGWLGTGK WNVKRTEMDE NGVCK
|
| Detection Method: |  |
| Confidence: | 13.39794 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.02652482814057 | bayes_pls_golite062009 |
|
Region A: Residues: [346-572] |
1 11 21 31 41 51
| | | | | |
1 CCKEKLVCID INPVETETFA ASLTRLACER EVKANFNQFQ EWLERHGPFD AVIDGANMGL 60
61 VNQRSFSFFQ LNNTVQRCQQ ISPSKRLPLV ILHKSRVNGG PATYPKNRAL LEKWKNAGAL 120
121 YATPPGSNDD WYWLYAAVSC KCLLVTNDEM RDHLFQLLGN SFFPRWKEKH QVRISVTRED 180
181 GLKLNMPPPY SIVIQESEDG TWHVPMSVED DLQTSRQWLC AKRSKTP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
