YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30684844
Organism: Arabidopsis thaliana
Length: 309 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30684844.

Description E-value Query
Range
Subject
Range
gi|125811286, gi... - gi|54636996|gb|EAL26399.1| GA12101-PA [Drosophila pseudoobscura], gi|125811286|ref|XP_001361820.1| G...
145.0 [0..16] [308..4709]

Back

Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQIAGASL NLLCQKEPSP YCLARHRRNN PDFSRNNKHG FRGRNRRNED KDGLVDGGLE  60
   61 DDMLSSKNEK EIVELFKKVQ VQLRARAAAK KEEKKTEEAS KGQGGKESET VDSLLKLLRK 120
  121 HSGEQSKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVSNFNSEKQ LQRDDDASER QNHSSSRFDS RNKDHNATPF TRPASSFKRN SPVPRHKSQA  60
   61 SYSSEAIFDE ASSYSVTWTQ KKDQVESRDE PEYEPEPESA AEYDEPEPEA EYEPESEPEL 120
  121 AILESVSELK LESFYQEEDE DEEDHNFVID ELSDDDESLN TDYRGRDCER RRFECTEVGR 180
  181 T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle