YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30684844
Organism: Arabidopsis thaliana
Length: 309 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30684844.

Description E-value Query
Range
Subject
Range
gi|125811286, gi... - gi|54636996|gb|EAL26399.1| GA12101-PA [Drosophila pseudoobscura], gi|125811286|ref|XP_001361820.1| G...
145.0 [0..16] [308..4709]

Back

Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQIAGASL NLLCQKEPSP YCLARHRRNN PDFSRNNKHG FRGRNRRNED KDGLVDGGLE  60
   61 DDMLSSKNEK EIVELFKKVQ VQLRARAAAK KEEKKTEEAS KGQGGKESET VDSLLKLLRK 120
  121 HSGEQSKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVSNFNSEKQ LQRDDDASER QNHSSSRFDS RNKDHNATPF TRPASSFKRN SPVPRHKSQA  60
   61 SYSSEAIFDE ASSYSVTWTQ KKDQVESRDE PEYEPEPESA AEYDEPEPEA EYEPESEPEL 120
  121 AILESVSELK LESFYQEEDE DEEDHNFVID ELSDDDESLN TDYRGRDCER RRFECTEVGR 180
  181 T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle