YRC Public Data Repository - Protein Structure Prediction

Protein:	USPA_ECOLI
Organism:	Escherichia coli
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for USPA_ECOLI.

Description	E-value	Query Range	Subject Range
Y531_METJA - Uncharacterized protein MJ0531 OS=Methanocaldococcus jannaschii GN=MJ0531 PE=3 SV=1 Y531_METJA - Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	138.0	[0..3]	[143..26]
Y1215_STAHJ - Putative universal stress protein SH1215 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1215 ...	134.0	[0..1]	[144..2]
gi\|68212208, gi\|... - gi\|91774262\|ref\|YP_566954.1\| hypothetical protein Mbur_2350 [Methanococcoides burtonii DSM 6242], gi...	133.0	[0..3]	[143..6]
gi\|156722162, gi... - gi\|156980027\|ref\|YP_001442286.1\| hypothetical protein SAHV_1696 [Staphylococcus aureus subsp. aureus... gi\|151221816, gi... - gi\|151221816\|ref\|YP_001332638.1\| universal stress protein family protein [Staphylococcus aureus subs... Y1759_STAAC - Putative universal stress protein SACOL1759 OS=Staphylococcus aureus (strain COL) GN=SACOL1759 PE=3 ... Y1819_STAA8 - Putative universal stress protein SAOUHSC_01819 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUH... gi\|227245637, gi... - gi\|227557901\|ref\|ZP_03987948.1\| universal stress protein [Staphylococcus aureus subsp. aureus MN8], ... gi\|227899789, gi... - gi\|227899789\|ref\|ZP_04017594.1\| universal stress protein [Staphylococcus aureus subsp. aureus TCH60]... gi\|251814700, gi... - gi\|251814700\|ref\|ZP_04829173.1\| universal stress protein [Staphylococcus aureus subsp. aureus TCH70]... gi\|253315115 - gi\|253315115\|ref\|ZP_04838328.1\| universal stress protein [Staphylococcus aureus subsp. aureus str. C... gi\|253723882, gi... - gi\|253732360\|ref\|ZP_04866525.1\| universal stress protein [Staphylococcus aureus subsp. aureus USA300... gi\|253727560, gi... - gi\|253734506\|ref\|ZP_04868671.1\| universal stress protein [Staphylococcus aureus subsp. aureus TCH130... gi\|255006495 - gi\|255006495\|ref\|ZP_05145096.2\| universal stress protein [Staphylococcus aureus subsp. aureus Mu50-o... gi\|269203348\|ref... - universal stress protein [Staphylococcus aureus subsp. aureus ED98] Y1656_STAA3 - Putative universal stress protein SAUSA300_1656 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300... Y1569_STAAB - Putative universal stress protein SAB1569 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=... gi\|87128061\|gb\|A... - universal stress protein family [Staphylococcus aureus subsp. aureus USA300], universal stress prote... Y1532_STAAN - Putative universal stress protein SA1532 OS=Staphylococcus aureus (strain N315) GN=SA1532 PE=1 SV=1 gi\|90583531, gi\|... - gi\|90583531\|ref\|ZP_01239286.1\| UspA [Staphylococcus aureus subsp. aureus JH1], gi\|90427385\|gb\|EAS528... gi\|90430855, gi\|... - gi\|90585468\|ref\|ZP_01241177.1\| UspA [Staphylococcus aureus subsp. aureus JH9], gi\|90430855\|gb\|EAS562... gi\|221137941 - gi\|221137941\|ref\|ZP_03562743.1\| universal stress protein [Staphylococcus aureus subsp. aureus str. J... gi\|160368733, gi... - gi\|161509924\|ref\|YP_001575583.1\| universal stress protein [Staphylococcus aureus subsp. aureus USA30... gi\|221142345 - gi\|221142345\|ref\|ZP_03566838.1\| universal stress protein [Staphylococcus aureus subsp. aureus str. J... Y1637_STAAS - Putative universal stress protein SAS1637 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1637 PE=3 ... Y1710_STAAM - Putative universal stress protein SAV1710 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SA... Y1653_STAAW - Putative universal stress protein MW1653 OS=Staphylococcus aureus (strain MW2) GN=MW1653 PE=3 SV=1 Y1788_STAAR - Putative universal stress protein SAR1788 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1788 PE=3 ... gi\|25506249 - pir\|\|B89955 conserved hypothetical protein SA1532 [imported] - Staphylococcus aureus (strain N315)	131.0	[0..2]	[141..3]
gi\|228917268, gi... - gi\|228917268\|ref\|ZP_04080825.1\| Universal stress protein [Bacillus thuringiensis serovar pulsiensis ... gi\|228935935, gi... - gi\|228935935\|ref\|ZP_04098745.1\| Universal stress protein [Bacillus thuringiensis serovar andalousien... gi\|228929678, gi... - gi\|228929678\|ref\|ZP_04092696.1\| Universal stress protein [Bacillus thuringiensis serovar pondicherie... gi\|228771923, gi... - gi\|228987875\|ref\|ZP_04147984.1\| Universal stress protein [Bacillus thuringiensis serovar tochigiensi... gi\|228811341, gi... - gi\|228948354\|ref\|ZP_04110637.1\| Universal stress protein [Bacillus thuringiensis serovar monterrey B... gi\|229124195, gi... - gi\|229124195\|ref\|ZP_04253387.1\| Universal stress protein [Bacillus cereus 95/8201], gi\|228659497\|gb\|... gi\|229093721, gi... - gi\|229093721\|ref\|ZP_04224820.1\| Universal stress protein [Bacillus cereus Rock3-42], gi\|228689606\|gb... gi\|228625191, gi... - gi\|229158233\|ref\|ZP_04286300.1\| Universal stress protein [Bacillus cereus ATCC 4342], gi\|228625191\|g... gi\|229141353, gi... - gi\|229141353\|ref\|ZP_04269891.1\| Universal stress protein [Bacillus cereus BDRD-ST26], gi\|228642134\|g... gi\|229198783, gi... - gi\|229198783\|ref\|ZP_04325479.1\| Universal stress protein [Bacillus cereus m1293], gi\|228584716\|gb\|EE... gi\|229186885, gi... - gi\|229186885\|ref\|ZP_04314040.1\| Universal stress protein [Bacillus cereus BGSC 6E1], gi\|228596622\|gb... gi\|65321995 - gi\|65321995\|ref\|ZP_00394954.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|118479769, gi... - gi\|118479769\|ref\|YP_896920.1\| universal stress protein [Bacillus thuringiensis str. Al Hakam], gi\|11...	131.0	[0..2]	[143..22]
Y1056_STAS1 - Putative universal stress protein SSP1056 OS=Staphylococcus saprophyticus subsp. saprophyticus (stra...	131.0	[0..1]	[144..2]
Y1273_STAEQ - Putative universal stress protein SERP1273 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A)... Y1385_STAES - Putative universal stress protein SE_1385 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_13...	131.0	[0..2]	[144..3]
gi\|20092887, gi\|... - gi\|20092887\|ref\|NP_618962.1\| universal stress protein [Methanosarcina acetivorans C2A], gi\|19918195\|...	129.0	[0..3]	[141..6]
gi\|48846987, gi\|... - gi\|78223874\|ref\|YP_385621.1\| hypothetical protein Gmet_2678 [Geobacter metallireducens GS-15], gi\|78...	128.0	[0..2]	[142..3]
gi\|72395196, gi\|... - gi\|73668034\|ref\|YP_304049.1\| universal stress protein [Methanosarcina barkeri str. Fusaro], gi\|72395...	128.0	[0..3]	[142..6]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYKHILIAV DLSPESKVLV EKAVSMARPY NAKVSLIHVD VNYSDLYTGL IDVNLGDMQK  60
   61 RISEETHHAL TELSTNAGYP ITETLSGSGD LGQVLVDAIK KYDMDLVVCG HHQDFWSKLM 120
  121 SSARQLINTV HVDMLIVPLR DEEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1jmvA
Description:	Universal stress protein A, UspA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.151149560052223	bayes_pls_golite062009
catalytic activity	0.062439821475123	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: