YRC Public Data Repository - Protein Structure Prediction

Protein:	RS17_ECOLI
Organism:	Escherichia coli
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS17_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67663338, gi\|... - gi\|67663338\|ref\|ZP_00460621.1\| Ribosomal protein L16 [Burkholderia cenocepacia HI2424], gi\|67103181\|...	121.0	[0..5]	[84..216]
RS17_SHEFN - 30S ribosomal protein S17 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpsQ PE=3 SV=1	118.0	[0..1]	[82..1]
RS17_VIBF1 - 30S ribosomal protein S17 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpsQ PE=3 SV=1	118.0	[0..1]	[82..1]
gi\|12847180 - gi\|12847180\|dbj\|BAB27467.1\| unnamed protein product [Mus musculus]	118.0	[0..1]	[82..59]
RS17_SHEPC - 30S ribosomal protein S17 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpsQ PE=3 SV=1 RS17_SHEB8 - 30S ribosomal protein S17 OS=Shewanella baltica (strain OS185) GN=rpsQ PE=3 SV=1 gi\|124507468, gi... - gi\|124550502\|ref\|ZP_01708056.1\| ribosomal protein S17 [Shewanella putrefaciens 200], gi\|124507468\|gb... RS17_SHEB9 - 30S ribosomal protein S17 OS=Shewanella baltica (strain OS195) GN=rpsQ PE=3 SV=1 RS17_SHESW - 30S ribosomal protein S17 OS=Shewanella sp. (strain W3-18-1) GN=rpsQ PE=3 SV=1 RS17_SHEB2 - 30S ribosomal protein S17 OS=Shewanella baltica (strain OS223) GN=rpsQ PE=3 SV=1 RS17_SHEB5 - 30S ribosomal protein S17 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpsQ PE=3 SV=1	118.0	[0..1]	[82..1]
gi\|3402191, gi\|7... - pir\|\|T07165 ribosomal protein S11 - Cyanophora paradoxa (fragment), gi\|3402191\|emb\|CAA06411.1\| 40S r...	118.0	[0..1]	[82..68]
RS17_SHESA - 30S ribosomal protein S17 OS=Shewanella sp. (strain ANA-3) GN=rpsQ PE=3 SV=1 SO0240 - ribosomal protein S17 RS17_SHESM - 30S ribosomal protein S17 OS=Shewanella sp. (strain MR-4) GN=rpsQ PE=3 SV=1 RS17_SHEON - 30S ribosomal protein S17 OS=Shewanella oneidensis (strain MR-1) GN=rpsQ PE=3 SV=1 RS17_SHESR - 30S ribosomal protein S17 OS=Shewanella sp. (strain MR-7) GN=rpsQ PE=3 SV=1	118.0	[0..1]	[82..1]
RS17_SHEDO - 30S ribosomal protein S17 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=...	118.0	[0..1]	[82..1]
gi\|90409299, gi\|... - gi\|90409299\|ref\|ZP_01217396.1\| ribosomal protein S17 [Psychromonas sp. CNPT3], gi\|90309593\|gb\|EAS377...	117.0	[0..6]	[82..7]
gi\|13516490, gi\|... - gi\|71895103\|ref\|NP_001026004.1\| ribosomal protein S11 [Gallus gallus], gi\|13516490\|dbj\|BAB40319.1\| r...	116.0	[0..1]	[82..66]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKIRTLQG RVVSDKMEKS IVVAIERFVK HPIYGKFIKR TTKLHVHDEN NECGIGDVVE  60
   61 IRECRPLSKT KSWTLVRVVE KAVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	1vs5Q
Description:	No description for 1vs5Q was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.45319063235379	bayes_pls_golite062009
structural molecule activity	6.87843523680097	bayes_pls_golite062009
nucleic acid binding	2.61313484113692	bayes_pls_golite062009
binding	2.25744085310968	bayes_pls_golite062009
DNA binding	1.87254683997276	bayes_pls_golite062009
RNA binding	1.76502371106766	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
structure-specific DNA binding	1.11569046031534	bayes_pls_golite062009
single-stranded DNA binding	1.02592019321551	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.562603623565981	bayes_pls_golite062009
exoribonuclease activity	0.51569543713363	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.474251377131502	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.47336621289748	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.47336621289748	bayes_pls_golite062009
protein binding	0.360033745054291	bayes_pls_golite062009
3'-5' exonuclease activity	0.32253752994732	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.22548557495593	bayes_pls_golite062009
transcription regulator activity	0.0185639841733248	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: