YRC Public Data Repository - Protein Structure Prediction

Protein:	RS11_ECOLI
Organism:	Escherichia coli
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS11_ECOLI.

Description	E-value	Query Range	Subject Range
RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana (strain Toulouse) GN=rpsK PE=3 SV=1 RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana GN=rpsK PE=3 SV=1	203.0	[0..1]	[129..1]
RS11_OCHA4 - 30S ribosomal protein S11 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rp... RS11_BRUO2 - 30S ribosomal protein S11 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpsK PE=3 SV... RS11_BRUA2 - 30S ribosomal protein S11 OS=Brucella abortus (strain 2308) GN=rpsK PE=3 SV=1 RS11_BRUAB - 30S ribosomal protein S11 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsK PE=3 SV=1 RS11_BRUAB - 30S ribosomal protein S11 OS=Brucella abortus GN=rpsK PE=3 SV=1 gi\|225627681, gi... - gi\|225627681\|ref\|ZP_03785718.1\| 30S ribosomal protein S11 [Brucella ceti str. Cudo], gi\|225617686\|gb... gi\|239824366, gi... - gi\|239832099\|ref\|ZP_04680428.1\| 30S ribosomal protein S11 [Ochrobactrum intermedium LMG 3301], gi\|23... gi\|254689430 - gi\|254689430\|ref\|ZP_05152684.1\| 30S ribosomal protein S11 [Brucella abortus bv. 6 str. 870] RS11_BRUMB - 30S ribosomal protein S11 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpsK PE=3 SV=1 gi\|237788927, gi... - gi\|237815629\|ref\|ZP_04594626.1\| 30S ribosomal protein S11 [Brucella abortus str. 2308 A], gi\|2377889... gi\|254701951 - gi\|254701951\|ref\|ZP_05163779.1\| 30S ribosomal protein S11 [Brucella suis bv. 5 str. 513] gi\|254704495 - gi\|254704495\|ref\|ZP_05166323.1\| 30S ribosomal protein S11 [Brucella suis bv. 3 str. 686] gi\|254693915 - gi\|254693915\|ref\|ZP_05155743.1\| 30S ribosomal protein S11 [Brucella abortus bv. 3 str. Tulya] gi\|254697565 - gi\|254697565\|ref\|ZP_05159393.1\| 30S ribosomal protein S11 [Brucella abortus bv. 2 str. 86/8/59] RS11_BRUSU - 30S ribosomal protein S11 OS=Brucella suis GN=rpsK PE=3 SV=1 gi\|254714278 - gi\|254714278\|ref\|ZP_05176089.1\| 30S ribosomal protein S11 [Brucella ceti M644/93/1] gi\|254717715 - gi\|254717715\|ref\|ZP_05179526.1\| 30S ribosomal protein S11 [Brucella ceti M13/05/1] RS11_BRUSU - 30S ribosomal protein S11 OS=Brucella suis biovar 1 (strain 1330) GN=rpsK PE=3 SV=1 gi\|254706609 - gi\|254706609\|ref\|ZP_05168437.1\| 30S ribosomal protein S11 [Brucella pinnipedialis M163/99/10] RS11_BRUME - 30S ribosomal protein S11 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... gi\|254710281 - gi\|254710281\|ref\|ZP_05172092.1\| 30S ribosomal protein S11 [Brucella pinnipedialis B2/94] gi\|254719268 - gi\|254719268\|ref\|ZP_05181079.1\| 30S ribosomal protein S11 [Brucella sp. 83/13] RS11_BRUME - 30S ribosomal protein S11 OS=Brucella melitensis GN=rpsK PE=3 SV=1 RS11_BRUA1 - 30S ribosomal protein S11 OS=Brucella abortus (strain S19) GN=rpsK PE=3 SV=1 gi\|254730459 - gi\|254730459\|ref\|ZP_05189037.1\| 30S ribosomal protein S11 [Brucella abortus bv. 4 str. 292] RS11_BRUSI - 30S ribosomal protein S11 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpsK PE=3 SV=1 RS11_BRUC2 - 30S ribosomal protein S11 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsK PE=3 SV=1	202.0	[0..1]	[129..1]
RS11_BARHE - 30S ribosomal protein S11 OS=Bartonella henselae GN=rpsK PE=3 SV=1 RS11_BARHE - 30S ribosomal protein S11 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpsK...	202.0	[0..1]	[129..1]
RS11_SINMW - 30S ribosomal protein S11 OS=Sinorhizobium medicae (strain WSM419) GN=rpsK PE=3 SV=1 RS11_RHISN - 30S ribosomal protein S11 OS=Rhizobium sp. (strain NGR234) GN=rpsK PE=3 SV=1 RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti GN=rpsK PE=3 SV=1 RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti (strain 1021) GN=rpsK PE=3 SV=1	201.0	[0..1]	[129..1]
RS11_MARMM - 30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1	199.0	[0..1]	[129..1]
RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus GN=rpsK PE=3 SV=1 RS11_CAUCN - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsK PE=3 SV=1 RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsK PE=3 SV=1	199.0	[0..1]	[129..1]
gi\|23012205 - gi\|23012205\|ref\|ZP_00052349.1\| COG0100: Ribosomal protein S11 [Magnetospirillum magnetotacticum MS-1... RS11_METPB - 30S ribosomal protein S11 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=...	199.0	[0..1]	[129..1]
RS11_CAUSK - 30S ribosomal protein S11 OS=Caulobacter sp. (strain K31) GN=rpsK PE=3 SV=1	198.0	[0..1]	[129..1]
gi\|88915995, gi\|... - gi\|88937250\|ref\|ZP_01142827.1\| ribosomal protein S11 [Geobacter uraniumreducens Rf4], gi\|88915995\|gb...	197.0	[0..15]	[129..17]
RS11_GEOMG - 30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rps...	196.0	[0..15]	[129..17]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAPIRARK RVRKQVSDGV AHIHASFNNT IVTITDRQGN ALGWATAGGS GFRGSRKSTP  60
   61 FAAQVAAERC ADAVKEYGIK NLEVMVKGPG PGRESTIRAL NAAGFRITNI TDVTPIPHNG 120
  121 CRPPKKRRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1vs5K
Description:	No description for 1vs5K was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.83351366956976	bayes_pls_golite062009
structural molecule activity	9.25292687983044	bayes_pls_golite062009
RNA binding	1.52264031918826	bayes_pls_golite062009
nucleic acid binding	0.983215686081669	bayes_pls_golite062009
binding	0.558121720172199	bayes_pls_golite062009
rRNA binding	0.357032493028	bayes_pls_golite062009
catalytic activity	0.249767694451989	bayes_pls_golite062009
translation regulator activity	0.17520676474539	bayes_pls_golite062009
protein binding	0.013467373576568	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: