YRC Public Data Repository - Protein Structure Prediction

Protein:	RS7_ECOLI
Organism:	Escherichia coli
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS7_ECOLI.

Description	E-value	Query Range	Subject Range
RS7_SHIF8 - 30S ribosomal protein S7 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsG PE=3 SV=1	242.0	[0..1]	[179..1]
RS7_ECOLI - (P02359) 30S ribosomal protein S7	240.0	[0..2]	[179..1]
gi\|54778760 - gi\|54778760\|gb\|AAV39594.1\| ribosomal protein S7 [synthetic construct]	238.0	[0..2]	[179..26]
RS7_RHILO - 30S ribosomal protein S7 OS=Rhizobium loti (strain MAFF303099) GN=rpsG PE=3 SV=1 RS7_RHILO - 30S ribosomal protein S7 OS=Rhizobium loti GN=rpsG PE=3 SV=1	221.0	[0..1]	[156..1]
RS7_GEOSE - 30S ribosomal protein S7 OS=Geobacillus stearothermophilus GN=rpsG PE=1 SV=3	220.0	[0..1]	[156..1]
gi\|220706744, gi... - gi\|221089318\|ref\|ZP_03558838.1\| ribosomal protein S7 [Geobacillus sp. Y412MC61], gi\|220706744\|gb\|EED... gi\|229499926, gi... - gi\|229499926\|ref\|ZP_04393603.1\| ribosomal protein S7 [Geobacillus sp. Y412MC52], gi\|229329205\|gb\|EEN... RS7_GEOKA - 30S ribosomal protein S7 OS=Geobacillus kaustophilus GN=rpsG PE=3 SV=1 RS7_GEOKA - 30S ribosomal protein S7 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsG PE=3 SV=1	220.0	[0..1]	[156..1]
RS7_AGRFC - 30S ribosomal protein S7 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpsG PE=3 SV=1 gi\|25294576, gi\|... - gi\|25294576\|pir\|\|AD2816 30S ribosomal protein S7 [imported] - Agrobacterium tumefaciens (strain C58,...	219.0	[0..1]	[156..1]
RS7_CARHZ - 30S ribosomal protein S7 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	219.0	[0..1]	[156..1]
RS7_CHESB - 30S ribosomal protein S7 OS=Chelativorans sp. (strain BNC1) GN=rpsG PE=3 SV=1	217.0	[0..1]	[156..1]
gi\|196253511, gi... - gi\|196253511\|ref\|ZP_03152135.1\| ribosomal protein S7 [Clostridium thermocellum DSM 4150], gi\|1961970... RS7_CLOTH - 30S ribosomal protein S7 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N...	217.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRRVIGQR KILPDPKFGS ELLAKFVNIL MVDGKKSTAE SIVYSALETL AQRSGKSELE  60
   61 AFEVALENVR PTVEVKSRRV GGSTYQVPVE VRPVRRNALA MRWIVEAARK RGDKSMALRL 120
  121 ANELSDAAEN KGTAVKKRED VHRMAEANKA FAHYRWLSLR SFSHQAGASS KQPALGYLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.0
Match:	1vs5G
Description:	No description for 1vs5G was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.1836043075256	bayes_pls_golite062009
structural molecule activity	9.60531852031349	bayes_pls_golite062009
RNA binding	2.69930050072854	bayes_pls_golite062009
nucleic acid binding	1.38138936047113	bayes_pls_golite062009
binding	0.87606732735391	bayes_pls_golite062009
protein binding	0.060050417638174	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: