YRC Public Data Repository - Protein Structure Prediction

Protein:	DHSC_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHSC_COXBU.

Description	E-value	Query Range	Subject Range
gi\|2137070 - gi\|2137070\|pir\|\|I48085 integral membrane protein CII-3 - Chinese hamster (fragment)	138.0	[0..2]	[121..51]
gi\|57111445 - gi\|57111445\|ref\|XP_536140.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C precur...	134.0	[0..4]	[122..49]
gi\|83372565, gi\|... - gi\|83372565\|ref\|ZP_00917345.1\| similar to Succinate dehydrogenase/fumarate reductase cytochrome b su...	134.0	[0..4]	[124..45]
gi\|114316918, gi... - gi\|114328744\|ref\|YP_745901.1\| succinate dehydrogenase cytochrome b556 subunit [Granulibacter bethesd...	133.0	[0..5]	[122..75]
gi\|25520736 - pir\|\|F97676 succinate dehydrogenase membrane anchor chain (AF007569) [imported] - Agrobacterium tume... gi\|15889901, gi\|... - gi\|15889901\|ref\|NP_355582.1\| hypothetical protein AGR_C_4794 [Agrobacterium tumefaciens str. C58], g...	132.0	[0..1]	[124..39]
gi\|49077638 - gi\|49077638\|gb\|AAT49701.1\| PA1581 [synthetic construct]	131.0	[0..1]	[125..5]
gi\|194545667, gi... - gi\|254234682\|ref\|ZP_04928005.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa C3719], ... gi\|115584747, gi... - gi\|116049526\|ref\|YP_791670.1\| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas aerugino... gi\|218772688, gi... - gi\|218892462\|ref\|YP_002441329.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa LESB58]... gi\|254239930, gi... - gi\|254239930\|ref\|ZP_04933252.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 2192], g... gi\|11352600 - pir\|\|C83448 succinate dehydrogenase (C subunit) PA1581 [imported] - Pseudomonas aeruginosa (strain P... gi\|9947544, gi\|1... - gi\|9947544\|gb\|AAG04970.1\|AE004586_8 succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa PAO1...	131.0	[0..1]	[125..5]
gi\|13473609, gi\|... - gi\|14024359\|dbj\|BAB50963.1\| succinate dehydrogenase membrane anchor subunit [Mesorhizobium loti MAFF...	131.0	[0..3]	[122..13]
gi\|73535962, gi\|... - gi\|73535962\|pdb\|1ZP0\|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex Ii Bound With...	131.0	[0..3]	[122..19]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAKRPVNLD LTKFHFPPMA ILSIGHRISG FVLFLCMPLM FYLLHRATAS AESFYHLHQL  60
   61 LLHNGWIKLA VWIMLSATLF HLFAGIRHLA MDLGFWESVP EGRISAYTVF VVSFIAIVLA 120
  121 GVWIW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	1nekC
Description:	Succinate dehydrogenase subunit SdhC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.6133558935785	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.24661342841192	bayes_pls_golite062009
oxidoreductase activity	5.99989196344185	bayes_pls_golite062009
electron carrier activity	4.50772505551128	bayes_pls_golite062009
binding	1.1076219212629	bayes_pls_golite062009
catalytic activity	0.971825536251904	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: