YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24159015, gi\|...
Organism:	Homo sapiens
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24159015, gi|....

Description	E-value	Query Range	Subject Range
gi\|73950044 - gi\|73950044\|ref\|XP_865182.1\| PREDICTED: similar to Pumilio homolog 1 isoform 7 [Canis familiaris]	471.0	[0..1]	[349..750]
gi\|109000903 - gi\|109000903\|ref\|XP_001096633.1\| PREDICTED: similar to Pumilio homolog 1 isoform 4 [Macaca mulatta]	469.0	[0..1]	[349..752]
gi\|55732279 - gi\|55732279\|emb\|CAH92843.1\| hypothetical protein [Pongo abelii] PUM1_PONAB - Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1	469.0	[0..1]	[349..828]
gi\|114555208 - gi\|114555208\|ref\|XP_001157332.1\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes]	469.0	[0..1]	[349..749]

Back

Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRSRLLEDFR NNRYPNLQLR EIAGHIMEFS QDQHGSRFIQ LKLERATPAE RQLVFNEILQ  60
   61 AAYQLMVDVF GNYVIQKFFE FGSLEQKLAL AERIRGHVLS LALQMYGCRV IQKALEFIPS 120
  121 DQQNEMVREL DGHVLKCVKD QNGNHVVQKC IECVQPQSLQ FIIDAFKGQV FALSTHPYGC 180
  181 RVIQRILEHC LPDQTLPILE ELHQHTEQLV QDQYGNYVIQ HVLEHGRPED KSKIVAEIRG 240
  241 NVLVLSQHKF ASNVVEKCVT HASRTERAVL IDEVCTMNDG PHSALYTMMK DQYANYVVQK 300
  301 MIDVAEPGQR KIVMHKIRPH IATLRKYTYG KHILAKLEKY YMKNGVDLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	1ib2A
Description:	Pumilio 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.373576425899935	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: