YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258343, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258343, gi|....

Description	E-value	Query Range	Subject Range
gi\|17430370 - gi\|17430370\|emb\|CAD17135.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17548064 - gi\|17548064\|ref\|NP_521466.1\| transcription regulator protein [Ralstonia solanacearum GMI1000]	5.0E-29	[12..126]	[16..131]
gi\|69133946, gi\|... - gi\|69298712\|ref\|ZP_00620841.1\| regulatory protein, MerR [Silicibacter sp. TM1040], gi\|69133946\|gb\|EA...	5.0E-28	[4..126]	[147..269]
gi\|84666101, gi\|... - gi\|84686008\|ref\|ZP_01013904.1\| Cu(I)-responsive transcriptional regulator [Rhodobacterales bacterium...	6.0E-28	[11..126]	[1..116]
HMRR_SINMW - HTH-type transcriptional regulator HmrR OS=Sinorhizobium medicae (strain WSM419) GN=hmrR PE=1 SV=1 HMRR_RHIME - HTH-type transcriptional regulator hmrR - Rhizobium meliloti (Sinorhizobium meliloti)	1.0E-27	[11..126]	[1..117]
gi\|83941649, gi\|... - gi\|83941649\|ref\|ZP_00954111.1\| Cu(I)-responsive transcriptional regulator [Sulfitobacter sp. EE-36],...	2.0E-27	[11..126]	[1..116]
gi\|83842968, gi\|... - gi\|83855125\|ref\|ZP_00948655.1\| Cu(I)-responsive transcriptional regulator [Sulfitobacter sp. NAS-14....	2.0E-27	[11..126]	[1..116]
gi\|15888277, gi\|... - gi\|17934846\|ref\|NP_531636.1\| transcriptional regulator, MerR family [Agrobacterium tumefaciens str. ... gi\|25302889, gi\|... - pir\|\|AB2692 transcription regulator, MerR family cueR [imported] - Agrobacterium tumefaciens (strain...	2.0E-27	[11..126]	[1..117]
gi\|68348510, gi\|... - gi\|70734211\|ref\|YP_257851.1\| Cu(I)-responsive transcriptional regulator [Pseudomonas fluorescens Pf-...	3.0E-27	[11..126]	[1..117]
gi\|72120470, gi\|... - gi\|73543057\|ref\|YP_297577.1\| MerR family transcriptional regulator [Ralstonia eutropha JMP134], gi\|7...	5.0E-27	[11..126]	[1..117]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEDRRSAPL FPIGIVMDLT QLSARQIRYY EEHNLVSPTR TKGNRRLFSF NDVDKLLEIK  60
   61 DLLDQGLNMA GIKQVLLMKE NQTEAVKVKE ETKEISKTEL RKILRDELQH TGRFNRTSLR 120
  121 QGDISRFFH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.40729334364274	bayes_pls_golite062009
DNA binding	2.05877861880033	bayes_pls_golite062009
nucleic acid binding	1.99474406643819	bayes_pls_golite062009
transcription factor activity	1.84836087644732	bayes_pls_golite062009
binding	1.32395331736751	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: