YRC Public Data Repository - Protein Structure Prediction

Protein:	RAIA_ECOLI
Organism:	Escherichia coli
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAIA_ECOLI.

Description	E-value	Query Range	Subject Range
HPF_AZOVI - Ribosome hibernation promoting factor OS=Azotobacter vinelandii GN=hpf PE=3 SV=1	125.0	[0..1]	[107..1]
gi\|71909757, gi\|... - gi\|71909757\|ref\|YP_287344.1\| SSU ribosomal protein S30P / sigma 54 modulation protein [Dechloromonas...	124.0	[0..1]	[108..1]
gi\|78485316, gi\|... - gi\|78485316\|ref\|YP_391241.1\| sigma 54 modulation protein/ribosomal protein S30EA [Thiomicrospira cru...	124.0	[0..1]	[111..1]
gi\|54310344, gi\|... - gi\|54310344\|ref\|YP_131364.1\| putative sigma-54 modulation protein [Photobacterium profundum SS9], gi...	123.0	[0..1]	[95..3]
gi\|77955193, gi\|... - gi\|77955193\|ref\|ZP_00819568.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Marinobacter aqu...	122.0	[0..1]	[102..1]
gi\|28210085, gi\|... - gi\|28210085\|ref\|NP_781029.1\| SSU ribosomal protein S30P [Clostridium tetani E88], gi\|28202521\|gb\|AAO...	122.0	[0..1]	[108..1]
gi\|90326013, gi\|... - gi\|90412998\|ref\|ZP_01220996.1\| putative sigma-54 modulation protein [Photobacterium profundum 3TCK],...	122.0	[0..1]	[95..1]
gi\|42784341, gi\|... - gi\|42784341\|ref\|NP_981588.1\| ribosomal subunit interface protein [Bacillus cereus ATCC 10987], gi\|42... gi\|228584165, gi... - gi\|229199305\|ref\|ZP_04325972.1\| Ribosome-associated factor Y [Bacillus cereus m1293], gi\|228584165\|g... gi\|228823307, gi... - gi\|228936475\|ref\|ZP_04099273.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar andalou... gi\|206976850, gi... - gi\|206976850\|ref\|ZP_03237753.1\| ribosomal subunit interface protein [Bacillus cereus H3081.97], gi\|2... gi\|49481144, gi\|... - gi\|49481144\|ref\|YP_039178.1\| ribosomal subunit interface protein [Bacillus thuringiensis serovar kon...	122.0	[0..1]	[100..1]
gi\|228771268, gi... - gi\|228988412\|ref\|ZP_04148503.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar tochigi... gi\|217962670, gi... - gi\|217962670\|ref\|YP_002341244.1\| ribosomal subunit interface protein [Bacillus cereus AH187], gi\|217... gi\|229158753, gi... - gi\|229158753\|ref\|ZP_04286811.1\| Ribosome-associated factor Y [Bacillus cereus ATCC 4342], gi\|2286247... gi\|222098642, gi... - gi\|222098642\|ref\|YP_002532700.1\| ribosomal subunit interface protein [Bacillus cereus Q1], gi\|221242... gi\|228641531, gi... - gi\|229141916\|ref\|ZP_04270442.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26], gi\|2286415... gi\|47569295, gi\|... - gi\|47569295\|ref\|ZP_00239980.1\| ribosomal subunit interface protein [Bacillus cereus G9241], gi\|47568...	121.0	[0..1]	[113..1]
gi\|49612797, gi\|... - gi\|50122271\|ref\|YP_051438.1\| putative sigma(54) modulation protein [Pectobacterium atrosepticum SCRI...	121.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMNITSKQM EITPAIRQHV ADRLAKLEKW QTHLINPHII LSKEPQGFVA DATINTPNGV  60
   61 LVASGKHEDM YTAINELINK LERQLNKLQH KGEARRAATS VKDANFVEEV EEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1n3gA
Description:	Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.47304811799096	bayes_pls_golite062009
protein binding	0.411183424287687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: