YRC Public Data Repository - Protein Structure Prediction

Protein:	GLRX1_PIG
Organism:	Sus scrofa
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLRX1_PIG.

Description	E-value	Query Range	Subject Range
gi\|116310771, gi... - gi\|125548975\|gb\|EAY94797.1\| hypothetical protein OsI_16580 [Oryza sativa Indica Group], gi\|116310771... GRXC6_ORYSA, GLR... - Glutaredoxin-C6 (Glutaredoxin-C2 homolog 1) - Oryza sativa (Rice), (P55142) Glutaredoxin GRXC6_ORYSJ - Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2	135.0	[0..1]	[105..1]
GLRX_ORYSA - (P55142) Glutaredoxin	134.0	[0..1]	[105..1]
gi\|2724050, gi\|2... - gi\|2724056\|gb\|AAB92658.1\| glutaredoxin type I [Fritillaria agrestis], gi\|2724054\|gb\|AAB92657.1\| glut...	134.0	[0..1]	[105..1]
gi\|20141083 - gi\|20141083\|gb\|AAK53442.2\|AF374461_1 glutaredoxin [Deschampsia antarctica]	131.0	[0..1]	[105..1]
gi\|643695 - gi\|643695\|dbj\|BAA04769.1\| glutaredoxin [Homo sapiens]	129.0	[0..1]	[106..1]
GLRX_RICCO - Glutaredoxin OS=Ricinus communis PE=3 SV=1	129.0	[0..1]	[105..1]
gi\|30584863, gi\|... - gi\|60653469\|gb\|AAX29429.1\| glutaredoxin [synthetic construct], gi\|30584863\|gb\|AAP36684.1\| Homo sapie...	129.0	[0..1]	[106..1]
GRXC2_ARATH - Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1	128.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAFVNSKI QPGKVVVFIK PTCPFCRKTQ ELLSQLPFKE GLLEFVDITA TSDTNEIQDY  60
   61 LQQLTGARTV PRVFIGKECI GGCTDLESMH KRGELLTRLQ QIGALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1jhbA
Description:	HUMAN GLUTAREDOXIN IN FULLY REDUCED FORM, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.8464796631544	bayes_pls_golite062009
peroxidase activity	3.43831566988273	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.43831566988273	bayes_pls_golite062009
glutathione peroxidase activity	2.56524997297011	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.23310780102446	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
protein disulfide oxidoreductase activity	1.47769936616412	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
binding	1.25802922431343	bayes_pls_golite062009
selenium binding	1.1082524159827	bayes_pls_golite062009
transcription regulator activity	0.52671047749426	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.0801269279614203	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: