YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30063153, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30063153, gi|....

Description	E-value	Query Range	Subject Range
gi\|106770932, gi... - gi\|148654599\|ref\|YP_001274804.1\| pyridoxamine 5'-phosphate oxidase [Roseiflexus sp. RS-1], gi\|148566...	296.0	[0..8]	[218..1]
PDXH_ECO5E - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=p... gi\|208821813, gi... - gi\|208821813\|ref\|ZP_03262133.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4... gi\|217328903, gi... - gi\|217328903\|ref\|ZP_03444984.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. TW1... gi\|195939028 - gi\|195939028\|ref\|ZP_03084410.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4... gi\|189370944, gi... - gi\|189370944\|gb\|EDU89360.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC869],... gi\|254793255, gi... - gi\|254793255\|ref\|YP_003078092.1\| pyridoxine 5'-phosphate oxidase [Escherichia coli O157:H7 str. TW14... PDXH_ECO57 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O157:H7 GN=pdxH PE=3 SV=1 gi\|208731057, gi... - gi\|208816714\|ref\|ZP_03257834.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4... gi\|25284781, gi\|... - pir\|\|G85770 pyridoxinephosphate oxidase [imported] - Escherichia coli (strain O157:H7, substrain ED... gi\|208810284, gi... - gi\|208810284\|ref\|ZP_03252160.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4... gi\|189360014, gi... - gi\|189360014\|gb\|EDU78433.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4486]... gi\|12515630, gi\|... - gi\|15802052\|ref\|NP_288074.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 EDL933], gi... gi\|189364999, gi... - gi\|189364999\|gb\|EDU83415.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4501]... gi\|188999208, gi... - gi\|188999208\|gb\|EDU68194.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4076]... gi\|187768649, gi... - gi\|187768649\|gb\|EDU32493.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4196]... gi\|189354268, gi... - gi\|189354268\|gb\|EDU72687.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4401]... gi\|188013553, gi... - gi\|188013553\|gb\|EDU51675.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. EC4113]... gi\|15831601, gi\|... - gi\|15831601\|ref\|NP_310374.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli O157:H7 str. Sakai]...	295.0	[0..1]	[218..1]
PDXH_ECO24 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN...	293.0	[0..1]	[218..1]
gi\|193070255, gi... - gi\|75234951\|ref\|ZP_00719230.1\| COG0259: Pyridoxamine-phosphate oxidase [Escherichia coli E110019], g... PDXH_ECO8A - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O8 (strain IAI1) GN=pdxH PE=3 SV=1 PDXH_ECO55 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli (strain 55989 / EAEC) GN=pdxH PE=3 ... PDXH_SHISS - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Shigella sonnei (strain Ss046) GN=pdxH PE=3 SV=1 PDXH_ECOSE - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli (strain SE11) GN=pdxH PE=3 SV=1 PDXH_SHIB3 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS...	292.0	[0..1]	[218..1]
PDXH_SALTI - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella typhi GN=pdxH PE=3 SV=1 gi\|213586446 - gi\|213586446\|ref\|ZP_03368272.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... gi\|29141775, gi\|... - gi\|29141775\|ref\|NP_805117.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica ... gi\|213649177 - gi\|213649177\|ref\|ZP_03379230.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... gi\|213981250 - gi\|213981250\|ref\|ZP_03408509.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... gi\|214000282 - gi\|214000282\|ref\|ZP_03411017.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... gi\|16760465 - gi\|16760465\|ref\|NP_456082.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica ... gi\|213051638 - gi\|213051638\|ref\|ZP_03344516.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... gi\|213425989 - gi\|213425989\|ref\|ZP_03358739.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... PDXH_SALTI - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella typhi GN=pdxH PE=3 SV=1	292.0	[0..1]	[218..1]
gi\|193064968, gi... - gi\|75257057\|ref\|ZP_00728617.1\| COG0259: Pyridoxamine-phosphate oxidase [Escherichia coli E22], gi\|19... gi\|194426033, gi... - gi\|75212975\|ref\|ZP_00712973.1\| COG0259: Pyridoxamine-phosphate oxidase [Escherichia coli B171], gi\|1...	292.0	[0..1]	[218..1]
gi\|226900339, gi... - gi\|237705582\|ref\|ZP_04536063.1\| pyridoxine/pyridoxamine 5'-phosphate oxidase [Escherichia sp. 3_2_53... PDXH_ECOUT - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli (strain UTI89 / UPEC) GN=pdxH PE=3 ... PDXH_ECO81 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O81 (strain ED1a) GN=pdxH PE=3 SV=1 PDXH_ECO45 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=pdxH... gi\|191173471, gi... - gi\|75238801\|ref\|ZP_00722785.1\| COG0259: Pyridoxamine-phosphate oxidase [Escherichia coli F11], gi\|19... PDXH_ECOL6 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O6 GN=pdxH PE=3 SV=1 PDXH_ECOK1 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O1:K1 / APEC GN=pdxH PE=3 SV=1 PDXH_ECOL5 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=p... PDXH_ECOL6 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|227885945, gi... - gi\|227885945\|ref\|ZP_04003750.1\| pyridoxamine 5'-phosphate oxidase [Escherichia coli 83972], gi\|22783...	292.0	[0..1]	[218..1]
gi\|168235520, gi... - gi\|197290951\|gb\|EDY30304.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica s... gi\|168229822, gi... - gi\|205335225\|gb\|EDZ21989.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica s... gi\|205346937, gi... - gi\|205346937\|gb\|EDZ33568.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica s... PDXH_SALCH - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella choleraesuis GN=pdxH PE=3 SV=1 gi\|205339325, gi... - gi\|205339325\|gb\|EDZ26089.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica s... PDXH_SALTY - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella typhimurium GN=pdxH PE=3 SV=1 lcl\|NC_016856.1_... - [gene=pdxH] [protein=pyridoxamine 5'-phosphate oxidase] [protein_id=YP_005237318.1] [location=153268... gi\|205327836, gi... - gi\|205327836\|gb\|EDZ14600.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica s... gi\|205323536, gi... - gi\|205323536\|gb\|EDZ11375.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica s... PDXH_SALPB - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... PDXH_SALEP - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella enteritidis PT4 (strain P125109) GN=pdxH ... PDXH_SALG2 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) G... PDXH_SALPC - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella paratyphi C (strain RKS4594) GN=pdxH PE=3... PDXH_SALDC - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella dublin (strain CT_02021853) GN=pdxH PE=3 ... PDXH_SALPK - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella paratyphi A (strain AKU_12601) GN=pdxH PE... gi\|204927951, gi... - gi\|204927951\|ref\|ZP_03219152.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... gi\|199602693, gi... - gi\|200390248\|ref\|ZP_03216859.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... PDXH_SALSV - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella schwarzengrund (strain CVM19633) GN=pdxH ... gi\|194458771, gi... - gi\|194472407\|ref\|ZP_03078391.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... gi\|197265568, gi... - gi\|197265568\|ref\|ZP_03165642.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri... PDXH_SALA4 - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella agona (strain SL483) GN=pdxH PE=3 SV=1 gi\|168819198, gi... - gi\|205343887\|gb\|EDZ30651.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica s... gi\|168463141, gi... - gi\|195634425\|gb\|EDX52777.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enterica s... PDXH_SALTY - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC... PDXH_SALHS - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella heidelberg (strain SL476) GN=pdxH PE=3 SV... PDXH_SALNS - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella newport (strain SL254) GN=pdxH PE=3 SV=1 PDXH_SALTY - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella typhimurium GN=pdxH PE=3 SV=1 PDXH_SALCH - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella choleraesuis GN=pdxH PE=3 SV=1 PDXH_SALPA - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella paratyphi A GN=pdxH PE=3 SV=1 PDXH_SALPB - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... PDXH_SALCH - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella choleraesuis (strain SC-B67) GN=pdxH PE=3... PDXH_SALPA - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) G... gi\|238913151 - gi\|238913151\|ref\|ZP_04656988.1\| pyridoxamine 5'-phosphate oxidase [Salmonella enterica subsp. enteri...	292.0	[0..1]	[218..1]
gi\|190904000, gi... - gi\|75230913\|ref\|ZP_00717362.1\| COG0259: Pyridoxamine-phosphate oxidase [Escherichia coli B7A], gi\|19...	291.0	[0..1]	[218..1]
PDXH_MARHV - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Marinobacter hydrocarbonoclasticus (strain ATCC 7004...	291.0	[0..8]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNDELQQI AHLRREYTKG GLRRRDLPAD PLTLFERWLS QACEAKLADP TAMVVATVDE  60
   61 HGQPYQRIVL LKHYDEKGMV FYTNLGSRKA HQIENNPRVS LLFPWHTLER QVMVIGKAER 120
  121 LSTLEVMKYF HSRPRDSQIG AWVSKQSSRI SARGILESKF LELKQKFQQG EVPLPSFWGG 180
  181 FRVSLEQIEF WQGGEHRLHD RFLYQRENDA WKIDRLAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.69897
Match:	1g76A
Description:	Pyridoxine 5'-phoshate oxidase (PNP oxidase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pyridoxamine-phosphate oxidase activity	3.81533880638523	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	1.18444956617957	bayes_pls_golite062009
catalytic activity	0.660906721832294	bayes_pls_golite062009
oxidoreductase activity	0.0268904833845668	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: