YRC Public Data Repository - Protein Structure Prediction

Protein:	SODF_ECOLI
Organism:	Escherichia coli
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SODF_ECOLI.

Description	E-value	Query Range	Subject Range
SODF_PSEAE - Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3 gi\|194549956, gi... - gi\|84316924\|ref\|ZP_00965382.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa C3719], gi\|2542... SODF_PSEAE - Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... gi\|194555809, gi... - gi\|84323103\|ref\|ZP_00971180.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa 2192], gi\|25424... gi\|218773685, gi... - gi\|218893457\|ref\|YP_002442326.1\| superoxide dismutase [Pseudomonas aeruginosa LESB58], gi\|218773685\|... gi\|116052400, gi... - gi\|32039580\|ref\|ZP_00137852.1\| COG0605: Superoxide dismutase [Pseudomonas aeruginosa UCBPP-PA14], gi... gi\|107100050 - gi\|107100050\|ref\|ZP_01363968.1\| hypothetical protein PaerPA_01001071 [Pseudomonas aeruginosa PACS2]	289.0	[0..1]	[193..1]
gi\|71735545, gi\|... - gi\|71735545\|ref\|YP_276190.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. phaseolicola 1448A],...	287.0	[0..1]	[193..1]
gi\|213924986, gi... - gi\|213970314\|ref\|ZP_03398444.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. tomato T1], gi\|21... tr\|Q87X27\|Q87X27... - Superoxide dismutase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=sodB PE=3 SV=1 gi\|28854750, gi\|... - gi\|28871499\|ref\|NP_794118.1\| superoxide dismutase, Fe [Pseudomonas syringae pv. tomato str. DC3000],...	285.0	[0..1]	[193..1]
SODF_PSEPK - Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3 gi\|148546197, gi... - gi\|82736011\|ref\|ZP_00898872.1\| superoxide dismutase (Fe) [Pseudomonas putida F1], gi\|82716998\|gb\|EAP... tr\|I7B8Q8\|I7B8Q8... - Superoxide dismutase OS=Pseudomonas putida (strain DOT-T1E) GN=sodB PE=3 SV=1	285.0	[0..1]	[192..1]
gi\|23104988, gi\|... - gi\|67156297\|ref\|ZP_00417890.1\| Superoxide dismutase [Azotobacter vinelandii AvOP], gi\|6552344\|dbj\|BA... gi\|67086056, gi\|... - gi\|67156297\|ref\|ZP_00417890.1\| Superoxide dismutase [Azotobacter vinelandii AvOP], gi\|67086056\|gb\|EA...	283.0	[0..1]	[193..1]
gi\|95109321 - gi\|95109321\|emb\|CAK14021.1\| superoxide dismutase [Fe] [Pseudomonas entomophila L48] gi\|104780334, gi... - gi\|95109321\|emb\|CAK14021.1\| superoxide dismutase [Fe] [Pseudomonas entomophila L48], gi\|104780334\|re...	283.0	[0..1]	[192..1]
gi\|63257993, gi\|... - gi\|66047286\|ref\|YP_237127.1\| superoxide dismutase [Pseudomonas syringae pv. syringae B728a], gi\|6325... gi\|4581924 - gi\|4581924\|gb\|AAD24797.1\|AF121079_1 iron-superoxide dismutase [Pseudomonas syringae pv. syringae]	283.0	[0..1]	[193..1]
gi\|53725863, gi\|... - gi\|53725863\|ref\|YP_103834.1\| superoxide dismutase [Burkholderia mallei ATCC 23344], gi\|52429286\|gb\|A...	283.0	[0..1]	[192..30]
gi\|68346450, gi\|... - gi\|70732151\|ref\|YP_261907.1\| superoxide dismutase (Fe) [Pseudomonas fluorescens Pf-5], gi\|68346450\|g...	282.0	[0..1]	[192..1]
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	282.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFELPALPY AKDALAPHIS AETIEYHYGK HHQTYVTNLN NLIKGTAFEG KSLEEIIRSS  60
   61 EGGVFNNAAQ VWNHTFYWNC LAPNAGGEPT GKVAEAIAAS FGSFADFKAQ FTDAAIKNFG 120
  121 SGWTWLVKNS DGKLAIVSTS NAGTPLTTDA TPLLTVDVWE HAYYIDYRNA RPGYLEHFWA 180
  181 LVNWEFVAKN LAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1isaA
Description:	Fe superoxide dismutase (FeSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity	2.73079314406851	bayes_pls_golite062009
protein binding	1.36581969443298	bayes_pls_golite062009
binding	1.30562201415299	bayes_pls_golite062009
antioxidant activity	0.766723962166325	bayes_pls_golite062009
cation binding	0.485672227923388	bayes_pls_golite062009
metal ion binding	0.485672227923388	bayes_pls_golite062009
ion binding	0.480092270451566	bayes_pls_golite062009
catalytic activity	0.390489225704392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: