YRC Public Data Repository - Protein Structure Prediction

Protein:	ACP_ECOLI
Organism:	Escherichia coli
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|58580505, gi\|... - gi\|58580505\|ref\|YP_199521.1\| acyl carrier protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842...	1.0E-19	[1..77]	[61..137]
gi\|69134791, gi\|... - gi\|69298444\|ref\|ZP_00620724.1\| Acyl carrier protein (ACP) [Silicibacter sp. TM1040], gi\|69134791\|gb\|...	5.0E-18	[1..75]	[75..149]
gi\|221481756 - gi\|221481756\|gb\|EEE20132.1\| acyl carrier protein, putative [Toxoplasma gondii GT1] gi\|237832401, gi... - gi\|237832401\|ref\|XP_002365498.1\| acyl carrier protein [Toxoplasma gondii ME49], gi\|211963162\|gb\|EEA9... gi\|3746415, gi\|3... - gi\|3746421\|gb\|AAC63956.1\| acyl carrier protein precursor [Toxoplasma gondii], gi\|3746415\|gb\|AAC63953... gi\|221502190 - gi\|221502190\|gb\|EEE27928.1\| acyl carrier protein, putative [Toxoplasma gondii VEG]	2.0E-17	[4..78]	[106..180]
gi\|34498868, gi\|... - gi\|34498868\|ref\|NP_903083.1\| acyl carrier protein [Chromobacterium violaceum ATCC 12472], gi\|3410472...	2.0E-17	[1..77]	[13..89]
gi\|33574257 - gi\|33574257\|emb\|CAE38589.1\| acyl carrier protein [Bordetella parapertussis] gi\|33597828 - gi\|33597828\|ref\|NP_885471.1\| acyl carrier protein [Bordetella parapertussis 12822]	3.0E-17	[1..76]	[20..95]
gi\|77024123\|gb\|A... - chloroplast acyl carrier protein [Karlodinium micrum] gi\|77024123 - gi\|77024123\|gb\|ABA55532.1\| chloroplast acyl carrier protein [Karlodinium micrum]	3.0E-17	[2..77]	[60..135]
gi\|111226160, gi... - gi\|111226160\|ref\|YP_716954.1\| acyl carrier protein (partial match) [Frankia alni ACN14a], gi\|1111536...	3.0E-17	[1..76]	[184..259]
gi\|50084083, gi\|... - gi\|50084083\|ref\|YP_045593.1\| acyl carrier protein (ACP) [Acinetobacter sp. ADP1], gi\|49530059\|emb\|CA...	3.0E-17	[1..78]	[37..114]
ACP_AQUAE - Acyl carrier protein OS=Aquifex aeolicus (strain VF5) GN=acpP PE=1 SV=1 ACP_AQUAE - Acyl carrier protein OS=Aquifex aeolicus GN=acpP PE=1 SV=1	6.0E-17	[3..78]	[2..77]
gi\|9656564, gi\|1... - gi\|9656564\|gb\|AAF95168.1\| acyl carrier protein [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15... gi\|11354385 - gi\|11354385\|pir\|\|E82128 acyl carrier protein VC2020 [imported] - Vibrio cholerae (strain N16961 ser... gi\|227013917, gi... - gi\|227118467\|ref\|YP_002820363.1\| acyl carrier protein [Vibrio cholerae O395], gi\|227013917\|gb\|ACP101... gi\|227082147, gi... - gi\|227082147\|ref\|YP_002810698.1\| acyl carrier protein [Vibrio cholerae M66-2], gi\|227010035\|gb\|ACP06...	9.0E-17	[1..76]	[33..108]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIEERVKK IIGEQLGVKQ EEVTNNASFV EDLGADSLDT VELVMALEEE FDTEIPDEEA  60
   61 EKITTVQAAI DYINGHQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	1l0hA
Description:	Acyl carrier protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acyl carrier activity	4.03850102890301	bayes_pls_golite062009
binding	0.540653991362249	bayes_pls_golite062009
catalytic activity	0.037428828577411	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: