YRC Public Data Repository - Protein Structure Prediction

Protein:	CSPC_ECOLI
Organism:	Escherichia coli
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSPC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|116609147, gi... - gi\|66963407\|ref\|ZP_00410979.1\| Cold-shock protein, DNA-binding [Arthrobacter sp. FB24], gi\|66871067\|...	4.0E-26	[3..69]	[1..67]
gi\|34498661, gi\|... - gi\|34498661\|ref\|NP_902876.1\| cold shock transcription regulator protein [Chromobacterium violaceum A...	1.0E-25	[3..69]	[44..110]
gi\|116651857, gi... - gi\|67661612\|ref\|ZP_00458904.1\| Cold-shock protein, DNA-binding [Burkholderia cenocepacia HI2424], gi...	1.0E-25	[1..68]	[102..169]
gi\|23004357 - gi\|23004357\|ref\|ZP_00047730.1\| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1]	1.0E-25	[3..69]	[1..67]
gi\|88856605, gi\|... - gi\|88856605\|ref\|ZP_01131262.1\| cold shock protein [marine actinobacterium PHSC20C1], gi\|88814259\|gb\|...	2.0E-25	[3..69]	[1..67]
gi\|110804727, gi... - gi\|110804727\|ref\|YP_688247.1\| cold shock protein CspE [Shigella flexneri 5 str. 8401], gi\|110614275\|...	2.0E-25	[1..69]	[29..97]
gi\|25029285, gi\|... - gi\|25029285\|ref\|NP_739339.1\| hypothetical protein CE2729 [Corynebacterium efficiens YS-314], gi\|2349...	2.0E-25	[3..69]	[185..251]
gi\|45440950, gi\|... - gi\|45440950\|ref\|NP_992489.1\| cold shock protein E [Yersinia pestis biovar Microtus str. 91001], gi\|4... gi\|21957922, gi\|... - gi\|22125069\|ref\|NP_668492.1\| cold shock protein E [Yersinia pestis KIM], gi\|21957922\|gb\|AAM84743.1\|A...	2.0E-25	[1..69]	[16..84]
gi\|26107003, gi\|... - gi\|26246604\|ref\|NP_752643.1\| cold shock protein E [Escherichia coli CFT073], gi\|26107003\|gb\|AAN79187... gi\|91209672, gi\|... - gi\|91209672\|ref\|YP_539658.1\| cold shock protein CspE [Escherichia coli UTI89], gi\|91071246\|gb\|ABE061... gi\|226898614, gi... - gi\|237707404\|ref\|ZP_04537885.1\| cold shock protein E [Escherichia sp. 3_2_53FAA], gi\|226898614\|gb\|EE...	3.0E-25	[1..69]	[29..97]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIKGQVKW FNESKGFGFI TPADGSKDVF VHFSAIQGNG FKTLAEGQNV EFEIQDGQKG  60
   61 PAAVNVTAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	1mjcA
Description:	CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.67999218416128	bayes_pls_golite062009
DNA binding	2.0554473444871	bayes_pls_golite062009
binding	1.49502978097244	bayes_pls_golite062009
transcription regulator activity	0.537716356194117	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: