YRC Public Data Repository - Protein Structure Prediction

Protein:	ADHE_ECOLI
Organism:	Escherichia coli
Length:	891 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ADHE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|36785819, gi\|... - gi\|37526388\|ref\|NP_929732.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Photorhabdus lumin...	799.0	[0..8]	[877..8]
gi\|62127947, gi\|... - gi\|62180314\|ref\|YP_216731.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella enteric...	797.0	[0..1]	[891..1]
gi\|229702148, gi... - gi\|229894855\|ref\|ZP_04510034.1\| multifunctional acetaldehyde-CoA dehydrogenase and iron-dependent al... gi\|45441777, gi\|... - gi\|45441777\|ref\|NP_993316.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Yersinia pestis bi... gi\|25283753 - pir\|\|AG0265 alcohol dehydrogenase (EC 1.1.1.1) [imported] - Yersinia pestis (strain CO92) gi\|15980182, gi\|... - gi\|218929278\|ref\|YP_002347153.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Yersinia pesti... gi\|51596429, gi\|... - gi\|51596429\|ref\|YP_070620.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Yersinia pseudotub... gi\|167400929, gi... - gi\|167400929\|ref\|ZP_02306435.1\| aldehyde-alcohol dehydrogenase [Yersinia pestis biovar Antiqua str. ... gi\|166961867, gi... - gi\|167420172\|ref\|ZP_02311925.1\| aldehyde-alcohol dehydrogenase [Yersinia pestis biovar Orientalis st... gi\|170024307, gi... - gi\|170024307\|ref\|YP_001720812.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Yersinia pseud... gi\|186698503, gi... - gi\|186895477\|ref\|YP_001872589.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Yersinia pseud... gi\|165938272, gi... - gi\|89104991\|ref\|ZP_01177519.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Yersinia pestis biova... gi\|108807532, gi... - gi\|108807532\|ref\|YP_651448.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Yersinia pestis A... gi\|162351931, gi... - gi\|77634014\|ref\|ZP_00796124.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Yersinia pestis Angol... gi\|153949366, gi... - gi\|77629185\|ref\|ZP_00791771.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Yersinia pseudotuberc... gi\|149292312, gi... - gi\|149365899\|ref\|ZP_01887934.1\| aldehyde-alcohol dehydrogenase [Yersinia pestis CA88-4125], gi\|14929... gi\|145209949, gi... - gi\|145598253\|ref\|YP_001162329.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Yersinia pesti... gi\|165927374, gi... - gi\|165927374\|ref\|ZP_02223206.1\| aldehyde-alcohol dehydrogenase [Yersinia pestis biovar Orientalis st... gi\|165991833, gi... - gi\|166009278\|ref\|ZP_02230176.1\| aldehyde-alcohol dehydrogenase [Yersinia pestis biovar Antiqua str. ... gi\|166207689, gi... - gi\|166210509\|ref\|ZP_02236544.1\| aldehyde-alcohol dehydrogenase [Yersinia pestis biovar Antiqua str. ... Q66AM7\|Q66AM7_YERPS - Aldehyde-alcohol dehydrogenase - Yersinia pseudotuberculosis gi\|229688536, gi... - gi\|229898246\|ref\|ZP_04513393.1\| multifunctional acetaldehyde-CoA dehydrogenase and iron-dependent al... gi\|229897601, gi... - gi\|229897601\|ref\|ZP_04512757.1\| multifunctional acetaldehyde-CoA dehydrogenase and iron-dependent al...	794.0	[0..1]	[889..1]
gi\|229681001, gi... - gi\|229902105\|ref\|ZP_04517226.1\| multifunctional acetaldehyde-CoA dehydrogenase and iron-dependent al... gi\|167424931, gi... - gi\|167424931\|ref\|ZP_02316684.1\| aldehyde-alcohol dehydrogenase [Yersinia pestis biovar Mediaevalis s... gi\|22125915, gi\|... - gi\|22125915\|ref\|NP_669338.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Yersinia pestis KI...	791.0	[0..1]	[889..1]
gi\|197248827, gi... - gi\|197248827\|ref\|YP_002146279.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica... gi\|197264457, gi... - gi\|197264457\|ref\|ZP_03164531.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica ... gi\|194472562, gi... - gi\|194472562\|ref\|ZP_03078546.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=adhE] [protein=bifunctional acetaldehyde-CoA/alcohol dehydrogenase] [protein_id=YP_005237675.1... gi\|194713283, gi... - gi\|194737781\|ref\|YP_002114780.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica... gi\|16420280, gi\|... - gi\|16765093\|ref\|NP_460708.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella typhimu... gi\|194445482, gi... - gi\|194445482\|ref\|YP_002041001.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica... gi\|194449103, gi... - gi\|194449103\|ref\|YP_002045794.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella ent... gi\|205351103, gi... - gi\|205351103\|gb\|EDZ37734.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica sero... gi\|205343856, gi... - gi\|205343856\|gb\|EDZ30620.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica sero... gi\|168237803, gi... - gi\|197289287\|gb\|EDY28654.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica sero... gi\|168241329, gi... - gi\|205339532\|gb\|EDZ26296.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica sero... gi\|205327523, gi... - gi\|205327523\|gb\|EDZ14287.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica sero... gi\|205335357, gi... - gi\|205335357\|gb\|EDZ22121.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica sero... gi\|205321926, gi... - gi\|205321926\|gb\|EDZ09765.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica sero... gi\|56413327, gi\|... - gi\|56413327\|ref\|YP_150402.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella enteric... gi\|207856741, gi... - gi\|207856741\|ref\|YP_002243392.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella ent... gi\|224583759, gi... - gi\|224583759\|ref\|YP_002637557.1\| alcohol dehydrogenase [Salmonella enterica subsp. enterica serovar ... gi\|200390520, gi... - gi\|200390520\|ref\|ZP_03217131.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica ... gi\|205272361, gi... - gi\|205352580\|ref\|YP_002226381.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella ent... gi\|197362252, gi... - gi\|197362252\|ref\|YP_002141889.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella ent... gi\|198244315, gi... - gi\|198244315\|ref\|YP_002215394.1\| aldehyde-alcohol dehydrogenase [Salmonella enterica subsp. enterica...	788.0	[0..1]	[879..1]
gi\|75190291, gi\|... - gi\|75190291\|ref\|ZP_00703558.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli E243...	787.0	[0..1]	[872..1]
gi\|213650446 - gi\|213650446\|ref\|ZP_03380499.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella ente... gi\|213426171 - gi\|213426171\|ref\|ZP_03358921.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella ente... gi\|213052125 - gi\|213052125\|ref\|ZP_03345003.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella ente... gi\|29142095, gi\|... - gi\|29142095\|ref\|NP_805437.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella enteric... gi\|16760134 - gi\|16760134\|ref\|NP_455751.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella enteric... gi\|16502428, gi\|... - gi\|25283750\|pir\|\|AE0650 alcohol dehydrogenase (EC 1.1.1.1) [imported] - Salmonella enterica subsp. e... gi\|213853054 - gi\|213853054\|ref\|ZP_03382586.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Salmonella ente...	787.0	[0..1]	[879..1]
gi\|238718764, gi... - gi\|77960743\|ref\|ZP_00824601.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Yersinia mollaretii A...	787.0	[0..1]	[869..1]
gi\|91210463, gi\|... - gi\|91210463\|ref\|YP_540449.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Escherichia coli U... gi\|110641469, gi... - gi\|110641469\|ref\|YP_669199.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Escherichia coli ... gi\|191171097, gi... - gi\|75242041\|ref\|ZP_00725835.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli F11]... gi\|218558168, gi... - gi\|218558168\|ref\|YP_002391081.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Escherichia co... gi\|227836535, gi... - gi\|227886331\|ref\|ZP_04004136.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Escherichia col... gi\|218426749, gi... - gi\|218689185\|ref\|YP_002397397.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Escherichia co... gi\|237705204, gi... - gi\|237705204\|ref\|ZP_04535685.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Escherichia sp.... gi\|117623455, gi... - gi\|117623455\|ref\|YP_852368.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Escherichia coli ...	786.0	[0..1]	[872..1]
gi\|238723361, gi... - gi\|77972680\|ref\|ZP_00828240.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Yersinia frederikseni...	786.0	[0..1]	[869..1]

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Predicted Domain #1

Region A:
Residues: [1-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTNVAELN ALVERVKKAQ REYASFTQEQ VDKIFRAAAL AAADARIPLA KMAVAESGMG  60
   61 IVEDKVIKNH FASEYIYNAY KDEKTCGVLS EDDTFGTITI AEPIGIICGI VPTTNPTSTA 120
  121 IFKSLISLKT RNAIIFSPHP RAKDATNKAA DIVLQAAIAA GAPKDLIGWI DQPSVELSNA 180
  181 LMHHPDINLI LATGGPGMVK AAYSSGKPAI GVGAGNTPVV IDETADIKRA VASVLMSKTF 240
  241 DNGVICASEQ SVVVVDSVYD AVRERFATHG GYLLQGKELK AVQDVILKNG ALNAAIVGQP 300
  301 AYKIAELAGF SVPENTKILI GEVTVVDESE PFAHEKLSPT LAMYRAKDFE DAVEKAEKLV 360
  361 AMGGIGHTSC LYTDQDNQPA RVSYFGQKMK TARILINTPA SQGGIGDLYN FKLAPSLTLG 420
  421 CGSWGGNSIS ENVGPKHLIN KKTVAKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	134.0
Match:	1bxsA
Description:	Aldehyde reductase (dehydrogenase), ALDH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	4.47226217021998	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	4.34495776828926	bayes_pls_golite062009
3-chloroallyl aldehyde dehydrogenase activity	3.37049090049734	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.2867555127991	bayes_pls_golite062009
aldehyde dehydrogenase (NAD) activity	2.81851373615334	bayes_pls_golite062009
catalytic activity	2.80804701752928	bayes_pls_golite062009
benzaldehyde dehydrogenase activity	1.80313175632526	bayes_pls_golite062009
methylmalonate-semialdehyde dehydrogenase (acylating) activity	1.59279206536309	bayes_pls_golite062009
1-pyrroline-5-carboxylate dehydrogenase activity	1.15620590715864	bayes_pls_golite062009
binding	0.637403449596354	bayes_pls_golite062009
NAD or NADH binding	0.00649065522387682	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [448-891]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AENMLWHKLP KSIYFRRGSL PIALDEVITD GHKRALIVTD RFLFNNGYAD QITSVLKAAG  60
   61 VETEVFFEVE ADPTLSIVRK GAELANSFKP DVIIALGGGS PMDAAKIMWV MYEHPETHFE 120
  121 ELALRFMDIR KRIYKFPKMG VKAKMIAVTT TSGTGSEVTP FAVVTDDATG QKYPLADYAL 180
  181 TPDMAIVDAN LVMDMPKSLC AFGGLDAVTH AMEAYVSVLA SEFSDGQALQ ALKLLKEYLP 240
  241 ASYHEGSKNP VARERVHSAA TIAGIAFANA FLGVCHSMAH KLGSQFHIPH GLANALLICN 300
  301 VIRYNANDNP TKQTAFSQYD RPQARRRYAE IADHLGLSAP GDRTAAKIEK LLAWLETLKA 360
  361 ELGIPKSIRE AGVQEADFLA NVDKLSEDAF DDQCTGANPR YPLISELKQI LLDTYYGRDY 420
  421 VEGETAAKKE AAPAKAEKKA KKSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.69897
Match:	1rrmA
Description:	Crystal Structure of Lactaldehyde reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alcohol dehydrogenase (NAD) activity	5.26400058766942	bayes_pls_golite062009
oxidoreductase activity	3.07409531087588	bayes_pls_golite062009
alcohol dehydrogenase activity, metal ion-independent	3.05722501802075	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	2.83823088483915	bayes_pls_golite062009
catalytic activity	2.37357608468991	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.10085302216488	bayes_pls_golite062009
binding	1.15096180564234	bayes_pls_golite062009
3-chloroallyl aldehyde dehydrogenase activity	0.831155115586418	bayes_pls_golite062009
cation binding	0.319000821544479	bayes_pls_golite062009
metal ion binding	0.319000821544479	bayes_pls_golite062009
ion binding	0.313606245452103	bayes_pls_golite062009
protein binding	0.295023706645045	bayes_pls_golite062009
transition metal ion binding	0.259889634539407	bayes_pls_golite062009
hydroxyacid-oxoacid transhydrogenase activity	0.146499147589879	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	0.0904828025133766	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: