YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIC_ECOLI
Organism:	Escherichia coli
Length:	498 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|69953675, gi\|... - gi\|69953675\|gb\|AAZ04310.1\| flagellin [Thermotoga sp. RQ2], gi\|170287974\|ref\|YP_001738212.1\| flagelli...	279.0	[0..3]	[497..1]
gi\|51342391 - gi\|51342391\|gb\|AAU01391.1\| phase 1 flagellin [Salmonella bongori]	265.0	[0..1]	[497..1]
gi\|1333833 - gi\|1333833\|emb\|CAA27128.1\| unnamed protein product [Salmonella paratyphi]	265.0	[0..1]	[497..5]
gi\|38049788 - gi\|38049788\|gb\|AAR10513.1\| phase 2 flagellin [Salmonella enterica]	265.0	[0..1]	[497..1]
gi\|88926515, gi\|... - gi\|88950138\|ref\|ZP_01152749.1\| flagelline [Halorhodospira halophila SL1], gi\|88926515\|gb\|EAR45484.1\|...	263.0	[0..1]	[497..1]
gi\|1333832 - gi\|1333832\|emb\|CAA27130.1\| unnamed protein product [Salmonella enterica subsp. enterica serovar Muen...	263.0	[0..1]	[497..5]
gi\|25299182 - pir\|\|E83834 flagellin BH1477 [imported] - Bacillus halodurans (strain C-125) gi\|15614040, gi\|... - gi\|15614040\|ref\|NP_242343.1\| flagellin [Bacillus halodurans C-125], gi\|10174094\|dbj\|BAB05196.1\| flag...	262.0	[0..3]	[497..1]
gi\|120315 - sp\|P06178\|FLIC_SALPA FLAGELLIN (PHASE-1-A FLAGELLIN) gi\|96748 - gi\|96748\|pir\|\|S07276 flagellin H-1A - Salmonella typhimurium gi\|96748\|pir\|\|S07276 - flagellin H-1A - Salmonella typhimurium	262.0	[0..1]	[497..1]

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Predicted Domain #1

Region A:
Residues: [1-498]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVINTNSL SLITQNNINK NQSALSSSIE RLSSGLRINS AKDDAAGQAI ANRFTSNIKG  60
   61 LTQAARNAND GISVAQTTEG ALSEINNNLQ RVRELTVQAT TGTNSESDLS SIQDEIKSRL 120
  121 DEIDRVSGQT QFNGVNVLAK NGSMKIQVGA NDNQTITIDL KQIDAKTLGL DGFSVKNNDT 180
  181 VTTSAPVTAF GATTTNNIKL TGITLSTEAA TDTGGTNPAS IEGVYTDNGN DYYAKITGGD 240
  241 NDGKYYAVTV ANDGTVTMAT GATANATVTD ANTTKATTIT SGGTPVQIDN TAGSATANLG 300
  301 AVSLVKLQDS KGNDTDTYAL KDTNGNLYAA DVNETTGAVS VKTITYTDSS GAASSPTAVK 360
  361 LGGDDGKTEV VDIDGKTYDS ADLNGGNLQT GLTAGGEALT AVANGKTTDP LKALDDAIAS 420
  421 VDKFRSSLGA VQNRLDSAVT NLNNTTTNLS EAQSRIQDAD YATEVSNMSK AQIIQQAGNS 480
  481 VLAKANQVPQ QVLSLLQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	1ucuA
Description:	R-type straight flagellar filament made of full-length flagellin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.34380033385124	bayes_pls_golite062009
protein binding	0.642381668726993	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: