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View Structure Prediction Details

Protein: gi|1037120
Organism: Mus sp.
Length: 222 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1037120.

Description E-value Query
Range
Subject
Range
gi|832851 - gi|832851|gb|AAB60902.1| manganese superoxide dismutase
340.0 [0..1] [222..1]
SODM_RAT - Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus GN=Sod2 PE=1 SV=2
338.0 [0..1] [222..1]
SODM_HORSE - Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1
338.0 [0..1] [222..1]
SODM_MACFA - Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3
337.0 [0..1] [222..1]
gi|30584207, gi|... - gi|61370092|gb|AAX43436.1| superoxide dismutase 2 mitochondrial [synthetic construct], gi|61370084|g...
336.0 [0..1] [222..1]
SOD2 - superoxide dismutase 2, mitochondrial
336.0 [0..1] [222..1]

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Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCRAACSTG RRLGPVAGAA GSRHKHSLPD LPYDYGALEP HINAQIMQLH HSKHHAAYVN  60
   61 NLNATEEKYH EALAKGDVTT QVALQPALKF NGGGHINHTI FWTNLSPKGG GEPKGELLEA 120
  121 IKRDFGSFEK FKEKLTAVSV GVQGSGWGWL GFNKEQGRLQ IAACSNQDPL QGTTGLIPLL 180
  181 GIDVWEHAYY LQYKNVRPDY LKAIWNVINW ENVTERYTAC KK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.30103
Match: 1n0jA
Description: Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
superoxide dismutase activity 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor 7.08472506566271 bayes_pls_golite062009
oxidoreductase activity 2.73079314406851 bayes_pls_golite062009
protein binding 1.36581969443298 bayes_pls_golite062009
binding 1.30562201415299 bayes_pls_golite062009
antioxidant activity 0.766723962166325 bayes_pls_golite062009
cation binding 0.485672227923388 bayes_pls_golite062009
metal ion binding 0.485672227923388 bayes_pls_golite062009
ion binding 0.480092270451566 bayes_pls_golite062009
catalytic activity 0.390489225704392 bayes_pls_golite062009

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Created and Maintained by: Michael Riffle