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View Structure Prediction Details

Protein: TA12B_ARATH
Organism: Arabidopsis thaliana
Length: 683 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TA12B_ARATH.

Description E-value Query
Range
Subject
Range
gi|73999130 - gi|73999130|ref|XP_544097.2| PREDICTED: similar to chromodomain helicase DNA binding protein 7 isofo...
259.0 [0..6] [565..30]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV  60
   61 TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH PSSSLDQQTQ TQQLVQQTQQ 120
  121 LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.24
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [165-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAQSLQRSPS LSRLSQIQQQ QQQQHQGQYG NVLRQQAGLY GTMNFGGSGS VQQSQQNQQM  60
   61 VNPNMSRAGL VGQSGHLPML NGAAGAAQMN IQPQLLAASP RQKSGMVQGS QFHPGSSGQQ 120
  121 LQGMQAMGMM GSLNLTSQMR GNPALYAQQR INPGQMRQQL SQQNALTSPQ VQNLQRTSSL 180
  181 AFMNPQLSGL AQNGQAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [362-524]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQNSLSQQQ WLKQMSGITS PNSFRLQPSQ RQALLLQQQQ QQQQQLSSPQ LHQSSMSLNQ  60
   61 QQISQIIQQQ QQQSQLGQSQ MNQSHSQQQL QQMQQQLQQQ PQQQMQQQQQ QQQQMQINQQ 120
  121 QPSPRMLSHA GQKSVSLTGS QPEATQSGTT TPGGSSSQGT EAT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.16
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [525-602]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQLLGKRKIQ DLVSQVDVHA KLDPDVEDLL LEVADDFIDS VTSFACSLAK HRKSSVLEPK  60
   61 DILLHLEKNL HLTIPGFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.221849
Match: 1h3oB
Description: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

Predicted Domain #5
Region A:
Residues: [603-683]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEDKRQTKTV PTDLHKKRLA MVRALLESSK PETNASNSKE TMRQAMVNPN GPNHLLRPSQ  60
   61 SSEQLVSQTS GPHILQHMTR Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.378 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.378 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.368 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.330 a.4.5 "Winged helix" DNA-binding domain
View Download 0.322 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle