YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16502248, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	717 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16502248, gi|....

Description	E-value	Query Range	Subject Range
gi\|224468947, gi... - gi\|224584420\|ref\|YP_002638218.1\| hypothetical protein SPC_2676 [Salmonella enterica subsp. enterica ... gi\|62179595, gi\|... - gi\|62179595\|ref\|YP_216012.1\| efflux (PET) family transporter [Salmonella enterica subsp. enterica se...	0.0	[1..717]	[1..717]
gi\|16764432, gi\|... - gi\|16764432\|ref\|NP_460047.1\| putative transporter [Salmonella typhimurium LT2], gi\|16419588\|gb\|AAL20... gi\|194407595, gi... - gi\|194449291\|ref\|YP_002045075.1\| hypothetical membrane protein [Salmonella enterica subsp. enterica ... gi\|205337173, gi... - gi\|205337173\|gb\|EDZ23937.1\| hypothetical membrane protein [Salmonella enterica subsp. enterica serov... gi\|168264166, gi... - gi\|205347325\|gb\|EDZ33956.1\| hypothetical membrane protein [Salmonella enterica subsp. enterica serov... gi\|167994901, gi... - gi\|205327292\|gb\|EDZ14056.1\| hypothetical membrane protein [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=yccS] [protein=putative transporter] [protein_id=YP_005236807.1] [location=complement(1122036....	0.0	[1..717]	[1..717]
gi\|56128187, gi\|... - gi\|56413930\|ref\|YP_151005.1\| hypothetical protein SPA1777 [Salmonella enterica subsp. enterica serov... gi\|197362853, gi... - gi\|197362853\|ref\|YP_002142490.1\| hypothetical protein SSPA1650 [Salmonella enterica subsp. enterica ...	0.0	[1..717]	[1..717]
gi\|82776251, gi\|... - gi\|82776251\|ref\|YP_402600.1\| hypothetical protein SDY_0935 [Shigella dysenteriae Sd197], gi\|81240399...	0.0	[1..708]	[4..711]
gi\|26246982, gi\|... - gi\|26246982\|ref\|NP_753022.1\| hypothetical protein c1097 [Escherichia coli CFT073], gi\|26107382\|gb\|AA... gi\|117623170, gi... - gi\|117623170\|ref\|YP_852083.1\| YccS [Escherichia coli APEC O1], gi\|115512294\|gb\|ABJ00369.1\| YccS [Esc... gi\|226898265, gi... - gi\|237707055\|ref\|ZP_04537536.1\| YccS [Escherichia sp. 3_2_53FAA], gi\|226898265\|gb\|EEH84524.1\| YccS [... gi\|91210056, gi\|... - gi\|91210056\|ref\|YP_540042.1\| hypothetical protein UTI89_C1026 [Escherichia coli UTI89], gi\|91071630\|... gi\|227884080, gi... - gi\|227884080\|ref\|ZP_04001885.1\| membrane protein [Escherichia coli 83972], gi\|227838832\|gb\|EEJ49298....	0.0	[1..708]	[4..711]
gi\|110342742, gi... - gi\|110641150\|ref\|YP_668880.1\| membrane protein YccS [Escherichia coli 536], gi\|110342742\|gb\|ABG68979... gi\|190905105, gi... - gi\|75235733\|ref\|ZP_00719900.1\| COG1289: Predicted membrane protein [Escherichia coli F11], gi\|191174...	0.0	[1..708]	[4..711]
gi\|24051242, gi\|... - gi\|24112373\|ref\|NP_706883.1\| hypothetical protein SF0962 [Shigella flexneri 2a str. 301], gi\|2405124... gi\|30062499, gi\|... - gi\|30062499\|ref\|NP_836670.1\| hypothetical protein S1028 [Shigella flexneri 2a str. 2457T], gi\|300407...	0.0	[1..711]	[4..714]
gi\|193066700, gi... - gi\|75255128\|ref\|ZP_00727015.1\| COG1289: Predicted membrane protein [Escherichia coli E22], gi\|193066... gi\|75208516, gi\|... - gi\|75208516\|ref\|ZP_00708834.1\| COG1289: Predicted membrane protein [Escherichia coli B171], gi\|19443... gi\|157157855, gi... - gi\|75190028\|ref\|ZP_00703295.1\| COG1289: Predicted membrane protein [Escherichia coli E24377A], gi\|15...	0.0	[1..708]	[4..711]
gi\|193070046, gi... - gi\|75235202\|ref\|ZP_00719444.1\| COG1289: Predicted membrane protein [Escherichia coli E110019], gi\|19... gi\|75230235, gi\|... - gi\|75230235\|ref\|ZP_00716732.1\| COG1289: Predicted membrane protein [Escherichia coli B7A], gi\|191166...	0.0	[1..708]	[4..711]
gi\|169888453, gi... - gi\|170080618\|ref\|YP_001729938.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|251784502, gi... - gi\|251784502\|ref\|YP_002998806.1\| hypothetical protein B21_00971 [Escherichia coli BL21], gi\|24237677... gi\|254161074, gi... - gi\|254161074\|ref\|YP_003044182.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|238900218, gi... - gi\|238900218\|ref\|YP_002926014.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... YCCS_ECOLI - Inner membrane protein yccS - Escherichia coli gi\|254287882, gi... - gi\|254287882\|ref\|YP_003053630.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|89107810, gi\|... - gi\|89107810\|ref\|AP_001590.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... EG13721 - putative transporter, FUSC superfamily inner membrane protein / Putative transporter, FUSC superfami... EG13721 - putative transporter, FUSC superfamily inner membrane protein / Putative transporter, FUSC superfami...	0.0	[1..708]	[1..708]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPLIRRYT WNSTWLYYIR IFIALCGTTA LPWWLGDVKL TIPLTLGMVA AALTDLDDRL  60
   61 AGRLRNLIIT LICFFIASAS VELLFPWPWL FALGLTLSTS GFILLGGLGQ RYATIAFGAL 120
  121 LIAIYTMLGA SLYDHWYQQP LLLLAGAVWY NLLTLTGHLL F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-717]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIRPLQDNLA RSYEQLAHYL ELKSRLFDPD IEDESQAPLY DLALANGQLM ATLNQTKVSL  60
   61 LTRLRGDRGQ RGTRRTLHYY FVAQDIHERA SSSHIQYQTL RDYFRHSDVM FRFQRLMSMQ 120
  121 AQACTQLARC ILLRTPYQHD PRFERVFTHI DAALERMRAS GASLELLNTL GFLLTNLRAI 180
  181 DAQLATIESE QAQAMPRNES ENQLADDSLH GFSDIWLRLS RNFTPESALF RHAVRMSLVL 240
  241 CIGYALIQIT GMRHGYWILL TSLFVCQPNY NATRHRLALR IIGTLVGVAI GLPILWFVPS 300
  301 LEGQLVLLVI TGVLFFAFRN VQYAHATMFI TLLVLLCFNL LGEGFEVALP RVIDTLIGCA 360
  361 IAWAAVSFIW PDWRFRNLPR VLQRATDANC RYLDAILEQY HQGRDNRLAY RIARRDAHNR 420
  421 DAELASVVSN MSSEPDVTAE TREAAFRLLC LNHTFTSYIS ALGAHREKLS NPDVLGLLDD 480
  481 AVCYVDDALH HQPEDEQRVH QALEGLKQRV QSLETRPDSK EPLVVQQIGL LIALLPEIGR 540
  541 LQRQISPPTS TLITQP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1hciA
Description:	alpha-actinin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.905633128746365	bayes_pls_golite062009
protein binding	0.618744687122036	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: