YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|12723803, gi|...
Organism: Lactococcus lactis subsp. lactis Il1403
Length: 125 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12723803, gi|....

Description E-value Query
Range
Subject
Range
gi|87282734, gi|... - gi|87302851|ref|ZP_01085662.1| 50S ribosomal protein L19 [Synechococcus sp. WH 5701], gi|87282734|gb...
180.0 [0..7] [123..52]
gi|62462618 - gi|62462618|ref|ZP_00382007.1| COG0335: Ribosomal protein L19 [Lactococcus lactis subsp. cremoris SK...
176.0 [0..7] [125..9]
gi|23493773, gi|... - gi|25028488|ref|NP_738542.1| 50S ribosomal protein L19 [Corynebacterium efficiens YS-314], gi|234937...
173.0 [0..12] [124..16]
RL19_SYNPX - 50S ribosomal protein L19 OS=Synechococcus sp. (strain WH8102) GN=rplS PE=3 SV=1
173.0 [0..7] [123..35]
gi|86168341, gi|... - gi|87123772|ref|ZP_01079622.1| ribosomal protein L19 [Synechococcus sp. RS9917], gi|86168341|gb|EAQ6...
173.0 [0..8] [123..51]
gi|41409070, gi|... - gi|41409070|ref|NP_961906.1| 50S ribosomal protein L19 [Mycobacterium avium subsp. paratuberculosis ...
173.0 [0..7] [124..45]
RL19_GEOMG - 50S ribosomal protein L19 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpl...
173.0 [0..12] [124..1]
gi|88788832, gi|... - gi|88807618|ref|ZP_01123130.1| 50S ribosomal protein L19 [Synechococcus sp. WH 7805], gi|88788832|gb...
172.0 [0..8] [123..46]
RL19_VIBCM - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplS PE=3 SV=1
gi|75814057, gi|... - gi|75814057|ref|ZP_00744708.1| COG0335: Ribosomal protein L19 [Vibrio cholerae V52], gi|121730267|re...
gi|229355920, gi... - gi|229507175|ref|ZP_04396681.1| LSU ribosomal protein L19p [Vibrio cholerae BX 330286], gi|229355920...
gi|229509160, gi... - gi|229509160|ref|ZP_04398645.1| LSU ribosomal protein L19p [Vibrio cholerae B33], gi|229353732|gb|EE...
gi|229512833, gi... - gi|229512833|ref|ZP_04402300.1| LSU ribosomal protein L19p [Vibrio cholerae TMA 21], gi|229350082|gb...
gi|229519630, gi... - gi|229519630|ref|ZP_04409073.1| LSU ribosomal protein L19p [Vibrio cholerae RC9], gi|229344319|gb|EE...
gi|229520860, gi... - gi|229520860|ref|ZP_04410282.1| LSU ribosomal protein L19p [Vibrio cholerae TM 11079-80], gi|2293420...
gi|197750586, gi... - gi|254292063|ref|ZP_04962839.1| ribosomal protein L19 [Vibrio cholerae AM-19226], gi|197750586|ref|Y...
gi|229338805, gi... - gi|229525224|ref|ZP_04414629.1| LSU ribosomal protein L19p [Vibrio cholerae bv. albensis VL426], gi|...
gi|148874301, gi... - gi|153830241|ref|ZP_01982908.1| ribosomal protein L19 [Vibrio cholerae 623-39], gi|148874301|gb|EDL7...
gi|229530377, gi... - gi|229530377|ref|ZP_04419765.1| LSU ribosomal protein L19p [Vibrio cholerae 12129(1)], gi|229332150|...
gi|229368802, gi... - gi|229606147|ref|YP_002876795.1| LSU ribosomal protein L19p [Vibrio cholerae MJ-1236], gi|229368802|...
RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G...
RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae GN=rplS PE=3 SV=3
gi|153216310, gi... - gi|153216310|ref|ZP_01950400.1| ribosomal protein L19 [Vibrio cholerae 1587], gi|124114352|gb|EAY331...
gi|124117868, gi... - gi|153224048|ref|ZP_01954193.1| ribosomal protein L19 [Vibrio cholerae MAK 757], gi|124117868|gb|EAY...
gi|124120841, gi... - gi|153803623|ref|ZP_01958209.1| ribosomal protein L19 [Vibrio cholerae MZO-3], gi|124120841|gb|EAY39...
gi|153820582, gi... - gi|153820582|ref|ZP_01973249.1| ribosomal protein L19 [Vibrio cholerae NCTC 8457], gi|126508874|gb|E...
gi|153827343, gi... - gi|153827343|ref|ZP_01980010.1| ribosomal protein L19 [Vibrio cholerae MZO-2], gi|149738738|gb|EDM53...
RL19_VIBC3 - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ...
gi|75828608, gi|... - gi|75828608|ref|ZP_00757979.1| COG0335: Ribosomal protein L19 [Vibrio cholerae MO10], gi|254850801|r...
172.0 [0..13] [123..3]
RL19_ENTFA - 50S ribosomal protein L19 OS=Enterococcus faecalis GN=rplS PE=3 SV=1
RL19_ENTFA - 50S ribosomal protein L19 OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=rplS PE=3 SV=1
gi|238856740, gi... - gi|238856740|ref|ZP_04647000.1| ribosomal protein L19 [Enterococcus faecalis TUSoD Ef11], gi|2388305...
172.0 [0..12] [125..2]

Back

Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNDGQEEK KMNLIESINA AQLRTDIPDF RPGDTVRVHA KVVEGTRERI QMFEGVVIAR  60
   61 KNSGINETYT VRKISNGVGV ERIFPVHTPR VEQIEVIRHG KVRRAKLYYL RALTGKKARI 120
  121 AERRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.39794
Match: 1vs6P
Description: No description for 1vs6P was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.75663213016935 bayes_pls_golite062009
structural molecule activity 9.17485893013108 bayes_pls_golite062009
RNA binding 1.4457902513736 bayes_pls_golite062009
binding 1.06497983674709 bayes_pls_golite062009
nucleic acid binding 0.694156012779703 bayes_pls_golite062009
transcription regulator activity 0.531244221462633 bayes_pls_golite062009
protein binding 0.403456843184132 bayes_pls_golite062009
translation regulator activity 0.20179424040045 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.177099375659271 bayes_pls_golite062009
DNA binding 0.119656223173058 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle