YRC Public Data Repository - Protein Structure Prediction

Protein:	PTA_ECOLI
Organism:	Escherichia coli
Length:	714 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110642501, gi... - gi\|110642501\|ref\|YP_670231.1\| phosphate acetyltransferase [Escherichia coli 536], gi\|110344093\|gb\|AB... gi\|191170103, gi... - gi\|191170103\|ref\|ZP_03031657.1\| phosphate acetyltransferase [Escherichia coli F11], gi\|190909619\|gb\|...	592.0	[0..1]	[714..1]
gi\|81246187, gi\|... - gi\|82544776\|ref\|YP_408723.1\| phosphate acetyltransferase [Shigella boydii Sb227], gi\|81246187\|gb\|ABB...	592.0	[0..1]	[714..1]
gi\|218428021, gi... - gi\|218690457\|ref\|YP_002398669.1\| phosphate acetyltransferase [Escherichia coli ED1a], gi\|218428021\|e... gi\|218559210, gi... - gi\|218559210\|ref\|YP_002392123.1\| phosphate acetyltransferase [Escherichia coli S88], gi\|218365979\|em... gi\|91211593, gi\|... - gi\|91211593\|ref\|YP_541579.1\| phosphate acetyltransferase [Escherichia coli UTI89], gi\|91073167\|gb\|AB... gi\|26248686, gi\|... - gi\|26248686\|ref\|NP_754726.1\| phosphate acetyltransferase [Escherichia coli CFT073], gi\|26109091\|gb\|A...	592.0	[0..1]	[714..1]
gi\|209765002, gi... - pir\|\|E91026 phosphotransacetylase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509... gi\|12516653, gi\|... - gi\|15802844\|ref\|NP_288871.1\| phosphate acetyltransferase [Escherichia coli O157:H7 EDL933], gi\|12516... gi\|13362651, gi\|... - gi\|15832435\|ref\|NP_311208.1\| phosphate acetyltransferase [Escherichia coli O157:H7], gi\|13362651\|dbj... gi\|13362651, gi\|... - gi\|15832435\|ref\|NP_311208.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|208819968, gi... - gi\|208819968\|ref\|ZP_03260288.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4042], ... gi\|209159857, gi... - gi\|209398457\|ref\|YP_002271706.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4115],... gi\|217327241, gi... - gi\|217327241\|ref\|ZP_03443324.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. TW14588],... gi\|218705827, gi... - gi\|218705827\|ref\|YP_002413346.1\| phosphate acetyltransferase [Escherichia coli UMN026], gi\|218432924... gi\|189405670, gi... - gi\|189405670\|ref\|ZP_02823477.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC508], g... gi\|195935676 - gi\|195935676\|ref\|ZP_03081058.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4024] gi\|208728335, gi... - gi\|208808534\|ref\|ZP_03250871.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4206], ... gi\|208733710, gi... - gi\|208812433\|ref\|ZP_03253762.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4045], ... gi\|189357739, gi... - gi\|189402105\|ref\|ZP_02780059.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4401], ... gi\|189403068, gi... - gi\|189403068\|ref\|ZP_02792933.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4486], ... gi\|189403966, gi... - gi\|189403966\|ref\|ZP_02786268.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4501], ... gi\|189372882, gi... - gi\|189404943\|ref\|ZP_02812214.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC869], g... gi\|254593590, gi... - gi\|254794190\|ref\|YP_003079027.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. TW14359]... gi\|187771320, gi... - gi\|187775769\|ref\|ZP_02797981.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4196], ... gi\|188024704, gi... - gi\|188024704\|ref\|ZP_02773171.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4113], ... gi\|189001885, gi... - gi\|189010142\|ref\|ZP_02805162.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4076], ...	592.0	[0..1]	[714..1]
gi\|1359438, gi\|1... - gi\|1359438\|dbj\|BAA04502.1\| phosphoacetyltransferase [Escherichia coli], pir\|\|JX0357 phosphate acetyl...	591.0	[0..1]	[714..1]
gi\|82777705, gi\|... - gi\|82777705\|ref\|YP_404054.1\| phosphate acetyltransferase [Shigella dysenteriae Sd197], gi\|81241853\|g...	590.0	[0..1]	[714..1]
gi\|49612489, gi\|... - gi\|50121963\|ref\|YP_051130.1\| phosphate acetyltransferase [Pectobacterium atrosepticum SCRI1043], gi\|...	590.0	[0..1]	[712..1]
gi\|56412765, gi\|... - gi\|56412765\|ref\|YP_149840.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|214002012 - gi\|214002012\|ref\|ZP_03412747.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|29141041, gi\|... - gi\|29141041\|ref\|NP_804383.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|213427003 - gi\|213427003\|ref\|ZP_03359753.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|16761263 - gi\|16761263\|ref\|NP_456880.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|197093175, gi... - gi\|197361699\|ref\|YP_002141335.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|25321719, gi\|... - gi\|25321719\|pir\|\|AH0798 phosphate acetyltransferase (EC 2.3.1.8) [imported] - Salmonella enterica su...	588.0	[0..1]	[714..1]
gi\|224467701, gi... - gi\|224583174\|ref\|YP_002636972.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=pta] [protein=phosphate acetyltransferase] [protein_id=YP_005238418.1] [location=2500770..2502... gi\|204929238, gi... - gi\|204929238\|ref\|ZP_03220381.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|207857756, gi... - gi\|207857756\|ref\|YP_002244407.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|198243957, gi... - gi\|198243957\|ref\|YP_002216409.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|199603748, gi... - gi\|200386650\|ref\|ZP_03213262.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. ent... gi\|238912383 - gi\|238912383\|ref\|ZP_04656220.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|197248002, gi... - gi\|197248002\|ref\|YP_002147298.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|197265259, gi... - gi\|197265259\|ref\|ZP_03165333.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194471410, gi... - gi\|194471410\|ref\|ZP_03077394.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194713110, gi... - gi\|194737608\|ref\|YP_002115408.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium GN=pta PE=1 SV=1 PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pta P... gi\|194402543, gi... - gi\|194443880\|ref\|YP_002041600.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|194448796, gi... - gi\|194448796\|ref\|YP_002046393.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|168465954, gi... - gi\|195631250\|gb\|EDX49810.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168817927, gi... - gi\|205344733\|gb\|EDZ31497.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|62180909, gi\|... - gi\|62180909\|ref\|YP_217326.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|205338663, gi... - gi\|205338663\|gb\|EDZ25427.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205349317, gi... - gi\|205349317\|gb\|EDZ35948.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168229712, gi... - gi\|205335916\|gb\|EDZ22680.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. enteric... gi\|197289725, gi... - gi\|197289725\|gb\|EDY29088.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205325221, gi... - gi\|205325221\|gb\|EDZ13060.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|167994690, gi... - gi\|205327484\|gb\|EDZ14248.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|161612930, gi... - gi\|161612930\|ref\|YP_001586895.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se...	588.0	[0..1]	[714..1]
gi\|229701798, gi... - gi\|229895312\|ref\|ZP_04510486.1\| phosphate acetyltransferase [Yersinia pestis Pestoides A], gi\|229701... gi\|229694476, gi... - gi\|229838110\|ref\|ZP_04458269.1\| phosphate acetyltransferase [Yersinia pestis biovar Orientalis str. ... Q668Y9\|Q668Y9_YERPS - Phosphate acetyltransferase - Yersinia pseudotuberculosis gi\|229688220, gi... - gi\|229898672\|ref\|ZP_04513817.1\| phosphate acetyltransferase [Yersinia pestis biovar Orientalis str. ... gi\|149365527, gi... - gi\|149365527\|ref\|ZP_01887562.1\| phosphate acetyltransferase [Yersinia pestis CA88-4125], gi\|14929194... gi\|145599254, gi... - gi\|145599254\|ref\|YP_001163330.1\| phosphate acetyltransferase [Yersinia pestis Pestoides F], gi\|14521... gi\|22125515, gi\|... - gi\|22125515\|ref\|NP_668938.1\| phosphate acetyltransferase [Yersinia pestis KIM], gi\|21958413\|gb\|AAM85... PTA_YERPE - Phosphate acetyltransferase OS=Yersinia pestis GN=pta PE=3 SV=1 gi\|229902671, gi... - gi\|229902671\|ref\|ZP_04517788.1\| phosphate acetyltransferase [Yersinia pestis Nepal516], gi\|229680118... gi\|51596917, gi\|... - gi\|51596917\|ref\|YP_071108.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis IP 32953], gi\|... gi\|108779964, gi... - gi\|108808051\|ref\|YP_651967.1\| phosphate acetyltransferase [Yersinia pestis Antiqua], gi\|108779964\|gb... gi\|45437031, gi\|... - gi\|45442167\|ref\|NP_993706.1\| phosphate acetyltransferase [Yersinia pestis biovar Microtus str. 91001... gi\|167398784, gi... - gi\|167398784\|ref\|ZP_02304308.1\| phosphate acetyltransferase [Yersinia pestis biovar Antiqua str. UG0... gi\|115348264, gi... - gi\|218929653\|ref\|YP_002347528.1\| phosphate acetyltransferase [Yersinia pestis CO92], gi\|16122785\|ref... gi\|165992827, gi... - gi\|166008445\|ref\|ZP_02229343.1\| phosphate acetyltransferase [Yersinia pestis biovar Antiqua str. E19... gi\|186895997, gi... - gi\|186895997\|ref\|YP_001873109.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis PB1/+], gi... gi\|152959769, gi... - gi\|153948274\|ref\|YP_001400421.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis IP 31758],... gi\|170023791, gi... - gi\|170023791\|ref\|YP_001720296.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis YPIII], gi...	588.0	[0..1]	[712..1]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIIMLIPT GTSVGLTSVS LGVIRAMERK GVRLSVFKPI AQPRTGGDAP DQTTTIVRAN  60
   61 SSTTTAAEPL KMSYVEGLLS SNQKDVLMEE IVANYHANTK DAEVVLVEGL VPTRKHQFAQ 120
  121 SLNYEIAKTL NAEIVFVMSQ GTDTPEQLKE RIELTRNSFG GAKNTNITGV IVNKLNAPVD 180
  181 EQGRTRPDLS EIFDDSSKAK VNNVDPAKLQ ESSPLPVLGA VPWSFDLIAT RAIDMARHLN 240
  241 ATII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1ionA
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.29060292615008	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [245-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEGDINTRRV KSVTFCARSI PHMLEHFRAG SLLVTSADRP DVLVAACLAA MNGVEIGALL  60
   61 LTGGYEMDAR ISKLCERAFA TGLPVFMVNT NTWQTSLSLQ SFNLEVPVDD HERIEKVQEY 120
  121 VANYINADWI ESLTAT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.69
Match:	2iojA
Description:	No description for 2iojA was found.

Predicted Domain #3

Region A:
Residues: [381-714]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SERSRRLSPP AFRYQLTELA RKAGKRIVLP EGDEPRTVKA AAICAERGIA TCVLLGNPAE  60
   61 INRVAASQGV ELGAGIEIVD PEVVRESYVG RLVELRKNKG MTETVAREQL EDNVVLGTLM 120
  121 LEQDEVDGLV SGAVHTTANT IRPPLQLIKT APGSSLVSSV FFMLLPEQVY VYGDCAINPD 180
  181 PTAEQLAEIA IQSADSAAAF GIEPRVAMLS YSTGTSGAGS DVEKVREATR LAQEKRPDLM 240
  241 IDGPLQYDAA VMADVAKSKA PNSPVAGRAT VFIFPDLNTG NTTYKAVQRS ADLISIGPML 300
  301 QGMRKPVNDL SRGALVDDIV YTIALTAIQS AQQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.522879
Match:	1r5jA
Description:	Crystal Structure of a Phosphotransacetylase from Streptococcus pyogenes
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
isocitrate dehydrogenase activity	4.07470589461733	bayes_pls_golite062009
isocitrate dehydrogenase (NAD+) activity	2.76980877987445	bayes_pls_golite062009
catalytic activity	2.71251959637136	bayes_pls_golite062009
isocitrate dehydrogenase (NADP+) activity	2.37654914320201	bayes_pls_golite062009
oxidoreductase activity	1.34383793575786	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.23338300186555	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.23134321553105	bayes_pls_golite062009
acetyltransferase activity	0.475874744828042	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: