YRC Public Data Repository - Protein Structure Prediction

Protein:	CHBF_ECOLI
Organism:	Escherichia coli
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHBF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89205072, gi\|... - gi\|89205072\|ref\|ZP_01183645.1\| Alpha-galactosidase [Bacillus weihenstephanensis KBAB4], gi\|89157086\|...	410.0	[0..2]	[445..1]
gi\|52005584, gi\|... - gi\|52787763\|ref\|YP_093592.1\| LicH [Bacillus licheniformis ATCC 14580], gi\|52350265\|gb\|AAU42899.1\| Li...	410.0	[0..1]	[445..1]
gi\|229153363, gi... - gi\|229153363\|ref\|ZP_04281541.1\| Glycoside hydrolase, family 4 [Bacillus cereus m1550], gi\|228629967\|... gi\|228635751, gi... - gi\|229147738\|ref\|ZP_04276081.1\| Glycoside hydrolase, family 4 [Bacillus cereus BDRD-ST24], gi\|228635... gi\|228652793, gi... - gi\|229130454\|ref\|ZP_04259410.1\| Glycoside hydrolase, family 4 [Bacillus cereus BDRD-Cer4], gi\|228652... gi\|30023242, gi\|... - gi\|30023242\|ref\|NP_834873.1\| 6-phospho-beta-glucosidase [Bacillus cereus ATCC 14579], gi\|29898802\|gb...	409.0	[0..2]	[445..1]
gi\|89086744, gi\|... - gi\|89098499\|ref\|ZP_01171382.1\| 6-phospho-beta-glucosidase [Bacillus sp. NRRL B-14911], gi\|89086744\|g...	408.0	[0..1]	[445..1]
gi\|229094302, gi... - gi\|229094302\|ref\|ZP_04225377.1\| Glycoside hydrolase, family 4 [Bacillus cereus Rock3-42], gi\|2286890... gi\|228936494, gi... - gi\|228936494\|ref\|ZP_04099292.1\| Glycoside hydrolase, family 4 [Bacillus thuringiensis serovar andalo... gi\|222098662, gi... - gi\|222098662\|ref\|YP_002532720.1\| 6-phospho-beta-glucosidase [Bacillus cereus Q1], gi\|221242721\|gb\|AC... gi\|206745000, gi... - gi\|206976865\|ref\|ZP_03237768.1\| 6-phospho-beta-glucosidase [Bacillus cereus H3081.97], gi\|206745000\|... gi\|49481176, gi\|... - gi\|49481176\|ref\|YP_039195.1\| 6-phospho-beta-glucosidase [Bacillus thuringiensis serovar konkukian st... gi\|196039527, gi... - gi\|196039527\|ref\|ZP_03106832.1\| 6-phospho-beta-glucosidase (Cellobiose-6-phosphatehydrolase) (Phosph...	408.0	[0..2]	[445..1]
gi\|164714246, gi... - gi\|165869923\|ref\|ZP_02214580.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. A0488], gi\|16471... gi\|118480243, gi... - gi\|118480243\|ref\|YP_897394.1\| 6-phospho-beta-glucosidase [Bacillus thuringiensis str. Al Hakam], gi\|... gi\|227005583, gi... - gi\|227817966\|ref\|YP_002817975.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. CDC 684], gi\|22... gi\|228841824, gi... - gi\|228917811\|ref\|ZP_04081349.1\| Glycoside hydrolase, family 4 [Bacillus thuringiensis serovar pulsie... gi\|228829493, gi... - gi\|228930208\|ref\|ZP_04093217.1\| Glycoside hydrolase, family 4 [Bacillus thuringiensis serovar pondic... gi\|167511510, gi... - gi\|167640467\|ref\|ZP_02398730.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. A0193], gi\|16751... gi\|228810681, gi... - gi\|228948925\|ref\|ZP_04111198.1\| Glycoside hydrolase, family 4 [Bacillus thuringiensis serovar monter... gi\|167635337, gi... - gi\|167635337\|ref\|ZP_02393652.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. A0442], gi\|16752... gi\|229199322, gi... - gi\|229199322\|ref\|ZP_04325989.1\| Glycoside hydrolase, family 4 [Bacillus cereus m1293], gi\|228584182\|... gi\|170707804, gi... - gi\|170707804\|ref\|ZP_02898255.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. A0389], gi\|17012... gi\|229604140, gi... - gi\|229604140\|ref\|YP_002869426.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. A0248], gi\|2292... gi\|170688019, gi... - gi\|170688019\|ref\|ZP_02879232.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. A0465], gi\|17066... gi\|254686370 - gi\|254686370\|ref\|ZP_05150229.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. CNEVA-9066] gi\|190561225, gi... - gi\|190567809\|ref\|ZP_03020721.1\| 6-phospho-beta-glucosidase [Bacillus anthracis Tsiankovskii-I], gi\|1... gi\|254724368 - gi\|254724368\|ref\|ZP_05186152.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. A1055] gi\|172081741, gi... - gi\|177652966\|ref\|ZP_02935293.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. A0174], gi\|17208... gi\|254735574 - gi\|254735574\|ref\|ZP_05193281.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. Western North Am... gi\|254744337 - gi\|254744337\|ref\|ZP_05202017.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. Kruger B] gi\|196045638, gi... - gi\|196045638\|ref\|ZP_03112868.1\| 6-phospho-beta-glucosidase [Bacillus cereus 03BB108], gi\|196023469\|g... gi\|254755636 - gi\|254755636\|ref\|ZP_05207669.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. Vollum] gi\|254757091 - gi\|254757091\|ref\|ZP_05209119.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. Australia 94] gi\|49181969, gi\|... - gi\|49188042\|ref\|YP_031295.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. Sterne], gi\|4918196... gi\|47530755, gi\|... - gi\|47530755\|ref\|YP_022104.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. 'Ames Ancestor'], g... gi\|30265232, gi\|... - gi\|30265232\|ref\|NP_847609.1\| 6-phospho-beta-glucosidase [Bacillus anthracis str. Ames], gi\|30259909\|... gi\|65317178, gi\|... - gi\|65317178\|ref\|ZP_00390137.1\| COG1486: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 o...	408.0	[0..2]	[445..1]
gi\|52140360, gi\|... - gi\|52140360\|ref\|YP_086471.1\| 6-phospho-beta-glucosidase [Bacillus cereus E33L], gi\|51973829\|gb\|AAU15...	408.0	[0..2]	[445..1]
gi\|221325345 - gi\|221325345\|ref\|ZP_03606639.1\| 6-phospho-beta-glucosidase [Bacillus subtilis subsp. subtilis str. S... LICH_BACSU - Probable 6-phospho-beta-glucosidase OS=Bacillus subtilis GN=licH PE=2 SV=1 gi\|221321060 - gi\|221321060\|ref\|ZP_03602354.1\| 6-phospho-beta-glucosidase [Bacillus subtilis subsp. subtilis str. J... LICH_BACSU - Probable 6-phospho-beta-glucosidase OS=Bacillus subtilis (strain 168) GN=licH PE=2 SV=1 gi\|221316149 - gi\|221316149\|ref\|ZP_03597954.1\| 6-phospho-beta-glucosidase [Bacillus subtilis subsp. subtilis str. N...	408.0	[0..1]	[445..1]
gi\|152977421, gi... - gi\|89201162\|ref\|ZP_01179908.1\| Alpha-galactosidase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi...	408.0	[0..2]	[445..1]
gi\|228988430, gi... - gi\|228988430\|ref\|ZP_04148521.1\| Glycoside hydrolase, family 4 [Bacillus thuringiensis serovar tochig... gi\|47569704, gi\|... - gi\|47570010\|ref\|ZP_00240672.1\| 6-phospho-beta-glucosidase [Bacillus cereus G9241], gi\|47569704\|ref\|Z... gi\|42784363, gi\|... - gi\|42784363\|ref\|NP_981610.1\| 6-phospho-beta-glucosidase [Bacillus cereus ATCC 10987], gi\|42740295\|gb...	407.0	[0..2]	[445..1]

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Predicted Domain #1

Region A:
Residues: [1-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKLKVVTI GGGSSYTPEL LEGFIKRYHE LPVSELWLVD VEGGKPKLDI IFDLCQRMID  60
   61 NAGVPMKLYK TLDRREALKD ADFVTTQLRV GQLPARELDE RIPLSHGYLG QETNGAGGLF 120
  121 KGLRTIPVIF DIVKDVEELC PNAWVINFTN PAGMVTEAVY RHTGFKRFIG VCNIPIGMKM 180
  181 FIRDVLMLKD SDDLSIDLFG LNHMVFIKDV LINGKSRFAE LLDGVASGQL KASSVKNIFD 240
  241 LPFSEGLIRS LNLLPCSYLL YYFKQKEMLA IEMGEYYKGG ARAQVVQKVE KQLFELYKNP 300
  301 ELKVKPKELE QRGGAYYSDA ACEVINAIYN DKQAEHYVNI PHHGQIDNIP ADWAVEMTCK 360
  361 LGRDGATPHP RITHFDDKVM GLIHTIKGFE IAASNAALSG EFNDVLLALN LSPLVHSDRD 420
  421 AELLAREMIL AHEKWLPNFA DCIAELKKAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1s6yA
Description:	2.3A crystal structure of phospho-beta-glucosidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.04073391751087	bayes_pls_golite062009
lactate dehydrogenase activity	0.87934022340198	bayes_pls_golite062009
oxidoreductase activity	0.801369736578234	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.800162074505462	bayes_pls_golite062009
L-lactate dehydrogenase activity	0.62197650488981	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.207367749250588	bayes_pls_golite062009
malate dehydrogenase activity	0.0457268286491508	bayes_pls_golite062009
L-malate dehydrogenase activity	0.0199505659839099	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: